Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00542 ATGCCAGGGCTAACGTGCAACGCTTGCAACACGGAATTCAACGATGACACAGAGCAAAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAACCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTGACAGAAGCACTATTTCTGGCTAGGCAATCTGTGATTGCTCAAGAGAAAAATAAATTGAGTGAGACCCCGATGCTCTATAGCTGCGGTCTTTGTGGAAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCCTCTGAAGGAACTAGTGATGCAGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTCTTGTGAATAGGCCTCCTCCTAGAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAAGATGAATGGGTGGAGGTTGATCCTGAAGATGATTTGGTTGATGGGGCTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGAAAATGTTGATATGGATGAAGATGAAGATGACAATGATGAGGATGACTTTGAGGAATTAGACCCCTCATGTTGCTTTATGTGTGATCAAAAGCACAAAACAATTGAAGACTGCATGGTTCACATGCACAAGCATCACGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACATATCTTGGCCTTAAGGTCAAAAGGGACTATGTGTGTCTGTACTGCAATGATCGATGCTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCCGCAAAAAGCCATTGTAAAGTGCATTTTGGTGATGGTGATGATGAGGAGGAGGTTGAGTTAGAAGAGTTCTATGACTACAGCAGCAGTTATGTGGATGATCAGGGCAAGCAGCTCATTGTATCTGGTGAAACAGCTAACAATGTAGAAATTGTTGGTGGGTCTGAGCTCATAATCACCAGGAAATCTGGTGATAGAATATCAACCAGAACACTTGGTTCCCGTGAATTTTTGCGATATTATCGTCAGAAACCCCGGCCGTCACCAGCAAATAATATGGCCATTACTGCTGCGTTGGCTTCAAGGTACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTGCTGAAGGAAATGAATAGGTCAGGTGTGGAAAATATGCGTACCAAGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCAAAGAATGTCCCATATTAG 1245 0.4394 MPGLTCNACNTEFNDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKLSETPMLYSCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSDADEKAIIKPLPQRLVNRPPPRREVDNSENEESEDEWVEVDPEDDLVDGAAKSLTDLNVNEHGENVDMDEDEDDNDEDDFEELDPSCCFMCDQKHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYVCLYCNDRCYPFSSLEAVRKHMAAKSHCKVHFGDGDDEEEVELEEFYDYSSSYVDDQGKQLIVSGETANNVEIVGGSELIITRKSGDRISTRTLGSREFLRYYRQKPRPSPANNMAITAALASRYRSMGLTTVQSREQIVRMKVLKEMNRSGVENMRTKIAMKSNVIRNLPKNVPY* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00542 414 SMART c2h2final6 68 92 IPR013087 -
Lapu8g00542 414 SMART c2h2final6 187 209 IPR013087 -
Lapu8g00542 414 SMART c2h2final6 4 28 IPR013087 -
Lapu8g00542 414 SMART c2h2final6 238 265 IPR013087 -
Lapu8g00542 414 Pfam C2H2 type zinc-finger (2 copies) 189 290 IPR041661 -
Lapu8g00542 414 SUPERFAMILY beta-beta-alpha zinc fingers 172 247 IPR036236 -
Lapu8g00542 414 PANTHER ZINC FINGER PROTEIN 622 2 413 IPR040025 -
Lapu8g00542 414 MobiDBLite consensus disorder prediction 159 181 - -
Lapu8g00542 414 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Lapu8g00542 414 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lapu8g00542 414 MobiDBLite consensus disorder prediction 166 181 - -
Lapu8g00542 414 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Lapu8g00542 414 MobiDBLite consensus disorder prediction 113 143 - -
Lapu8g00542 414 MobiDBLite consensus disorder prediction 84 103 - -
Lapu8g00542 414 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00542 Lapu-Chr8 22751547 22755044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00542 1 414 C2H2 Transcription Factor Family AT4G31420 66.268 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu8g00542 zf-C2H2_2 3.8e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00542 K14816 - gmx:100796317 712.99