Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00537 ATGGATGAGTATTCAGGTAGAAGAGGTGTGGATGGGGTGGTAGTCCCTAGGAAGGGGATTAGCCATGTATTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAAGTGGGTTGCAGTAGTAGAGCCAGTATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAAGGTAAATCCCCGAGGCCTTTATTCCAGTCCTCTTCAAGTAGCAGGGAAGCAGTTGGAAGTTCCTCTAGATGTACTAGTAACCCCGCAAAACGAATTATGGAACCTCGGAAAATATTATCCTCTCAGTTGGAGACAGATTCATCTGAAACTAGTAGTGTGCAGGATGAACCAGAATTTTCAGAGCTCAACCCTCCATCAGAAGAAATTCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTAATTCAAGGCTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGACCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGAGACATGCTGTTTCAAGCAGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATATCATCCCAGCTGGTTGTTCATCTTCAGATTCAAACCTTAATAGAAGAAAGGATACAATAAGAAAGAGAAACTGTGAAGGGGAAAGTAGTTCTACTGTCAGAGGGAAAAATATCATTGGGTCTTCACTGGAAGGACGGAATTCTTGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGATCAAGAAATACACCTTCTCACCGGAATACCAGTATGGCACCAGTAAGAACTCAAAGATCAATTAGTGGTCATGCCAGGGGAAGGTTTTCTAGCCAAGGAAATGAAAATCCTTTGGCAACGGCTGAGTTCCCTCATTCTGGTGGTGTTAATCCTCGTGGCATTTCATGTCAGATTTCTATGGCGACTCCTTTAAGTTGCTCAAGCTCTTATGATGATCCAGGCAATAGCAGTGAGCGGATATCTGGTGTCACACCTCTGTCTCCTGCAGAAGATGACTCCACTCATTCTCTAATAAATCAGGACAGCTTTCGACATTACAATATGGCCAGTATTGAAGGGGTATTATTGGCCCTTGAGAGGATTGAACAAGGTGCAGAGCTAACCCATGAGCAAATTCTTTTCTTCGGGACCAACTTGTTCGATAATGAATTAAACTTTTATGATCACCACAGAGACATGCGTTTGGATATTGATAACATGTCGTATGAGGAACTCTTAGCTCTAGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCGGAGGAAGCTCTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTGAACCTATAGATGATGCAGATGAGAATTGTAATGAGGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAACTTGGGGGTTTGCCATGCAAGCATAGGTTTCATGTGGGTTGCATAGAGGAGTGGATGGGGATGAAGAACTGGTGCCCTATTTGTAAATTATCTGCAGCACTGCCTAATAATCCATCTTCACCTCAATGA 1596 0.4248 MDEYSGRRGVDGVVVPRKGISHVFRDTANTRERTGQVCSKVGCSSRASIPKVAQVRSSEKGKSPRPLFQSSSSSREAVGSSSRCTSNPAKRIMEPRKILSSQLETDSSETSSVQDEPEFSELNPPSEEIQRGPKSRGGSSESSNSRLMEVGSSSSVSNTRSQRNLNQRPGLRGQEIKSTGPVRHAVSSRYGLRNIRCNTISDIIPAGCSSSDSNLNRRKDTIRKRNCEGESSSTVRGKNIIGSSLEGRNSCSRNGISISDSRRSRNTPSHRNTSMAPVRTQRSISGHARGRFSSQGNENPLATAEFPHSGGVNPRGISCQISMATPLSCSSSYDDPGNSSERISGVTPLSPAEDDSTHSLINQDSFRHYNMASIEGVLLALERIEQGAELTHEQILFFGTNLFDNELNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSEPIDDADENCNEDKDDIKCCICQEEYVIGDELGGLPCKHRFHVGCIEEWMGMKNWCPICKLSAALPNNPSSPQ* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00537 531 MobiDBLite consensus disorder prediction 63 88 - -
Lapu8g00537 531 MobiDBLite consensus disorder prediction 133 173 - -
Lapu8g00537 531 ProSiteProfiles Zinc finger RING-type profile. 477 518 IPR001841 -
Lapu8g00537 531 MobiDBLite consensus disorder prediction 232 302 - -
Lapu8g00537 531 SMART ring_2 477 517 IPR001841 -
Lapu8g00537 531 MobiDBLite consensus disorder prediction 330 357 - -
Lapu8g00537 531 SUPERFAMILY RING/U-box 471 522 - -
Lapu8g00537 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 521 IPR045191 GO:0061630
Lapu8g00537 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 522 IPR013083 -
Lapu8g00537 531 FunFam E3 ubiquitin-protein ligase arkadia 439 523 - -
Lapu8g00537 531 MobiDBLite consensus disorder prediction 227 310 - -
Lapu8g00537 531 MobiDBLite consensus disorder prediction 26 184 - -
Lapu8g00537 531 Pfam Ring finger domain 476 518 IPR001841 -
Lapu8g00537 531 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00537 Lapu-Chr8 22640795 22643511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00537 359 521 C3H Transcription Factor Family AT2G15530 44.172 6.47e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00537 - - vum:124824270 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00537 8 22640795 22643511 Lapu8g00537 8 22640795 22643511 ECH
Lapu8g00537 8 22640795 22643511 Lapu9g01811 9 32929446 32932358 PCT