Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00518 ATGGACGGTGAACGGAGCATGCCTGCTCCATCTCGTGGGCAAGTTGATGGCGCTCAGAAAGTTAAAGCATTACAAGGGAGGACTACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACATCAGAGGAGGATGATATCCTACGGAAGGCTGTTGAGAAATTTAAAGGAAAGAATTGGAAAAAAATTGCGGAATGTTTCAAGGATAGAACTGATGTGCAATGCCTCCATAGGTGGCAGAAAGTTTTAAACCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGACATAATTATTGAATTGGTGAATAAAAATGGGGCTAAAAAGTGGTCATCTCTTGCAAAACATTTACCTGGACGCATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCATGGACTCAGCAAGAGGAGTTGGCTCTAATACATTATCATCAGATTTTTGGGAACAAATGGGCTGAGTTGTCAAAGTATATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGACATCTGGTATGCTTAATCAGTTTGAGCCTGTACCTCATGTTGGAAATTCAAATCAATCAACAAGGTTGCTGTGTAGTGGAGATGATAACAGTTCCAAGATGATAAAAGGAGAAGAAGTTTCGGAGTCCAGCCAAGGTTCAGCTAATGCTGTTCACTTTCTAACTGCTAGAGGGACAGGCAGTGCTGAATTAACTGGAGAGGTGGCTTGTGTGCCAAATGAAGAATGTAATCTAAAGGATCATAGTCCAAGTCGAGCGTCTTGGTCCGAGCCATATTACGTATCAATCGATGATGTTAGTATATGCATTCCTGAAATTTCTCACCAAGAGGCATGCACTTCCCAGTTCATTGAGCAACAGTCACATGAACCTGGAAATTCCATAAGCCGGGATTGCCATTTCAATTTAGGTTCCTTACCCAATATTTCATCAATGGTCTTGGTGCAGGATTCCTCGCAGCTGCAGAGAGATTGTGTAGCTTCTAGTGAAATCTCTGGCATGGTGAATGTTCCACTTCAGACTTCAGAGGGTTTGGGTGCTTCATCCTCGATGGGAGCTGCATCTTTGGATTCTCCAAAACCAGAGCATGTGATGATATCTGATGATGAATGTTGCAGAGTTCTGTTTTCGGATTCAATGAATGATGGGTGTTTCCCCCTTGTAGATTATAATAAAGGTGAAGATACAGTTGAATTTTCTGGATGTACTTCATTTTTTTGCCAATCTTGTAATATTCAGATGTCTGAAACTGGTAGATCCTCAACTCCTCCGCAAACTTGTCCTCGGTGTTCTAATAATTATCAAGGAACTTCGTCCTCCCTGTCTTTCCATCCAGTAATTTCTGCTTGTCATGATGGGGTGGGGCTGACTGCCAACAACAATCAATTATTTGGGACAATGGGTCAACAGTTAATCTCCAGCACACCTGCTAACTTCTCTTATGTCAATGACATATCCAGTTCTCCCTGTGTTGATGGTATGAGTACTGCAGTAATGGAAGAACAACGTGATATTCTGAATGGTACTTCAGAGGAAAAAACAAATGCGCATACAGAAAAGGAGGACTCAGGTTCTCTTTGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGTTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAATTGTCTTACTCCTTTCAGGTTGTGGGACTCACCTTCTCGAGATAATAGTCCAGATGCGTTGTTAAAAAGTGCTGCTAAAACTTTTACAGGTACACCATCCATATTAAAGAAACGACACCGAGATTTGTTGTCACCACTCTCAGATAAAAGAATAGATAAGAAACTTGAGACTGAGACGACAACATTCTCCAAAAACATTTCCAGTTTGGATGTCATGTTTGGTGACAATGAGACTGAAGAGGCAGATATGCCTTCAGTGCAAAAACAGAATAGTAGTGCATGTGTTGATGATGATAATAAAGAAAATTGTGGACAAGTTTCTAAGCCCAACAAAGATACTGTAGATAATTCCCAGCCTAATGTCAAGCAACAGCGGCTAAAGGTTGATGCCTCAGCTACTGTGATGGAACAAGAACCTTCTGGAATTTTGGTTGAACATGATGTGAATGACCTTTCGCTGTCTTCTCCTGATAAAGTTGGTTTAAAATCAAACAGAGGTCTGGGTTCAAGTACTAAAACACCCAAAAGCATGAACAGGTCCTTGGAAGCAGTTCCAAATCAGAACAGCCATTTGAAATTATCTTCTAAAATTCCATGCTCAAGGATTAATTCTAATTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAAACTTTCAGTTGCTGTTACTCGTGTACAAGCTCCAGGGGACAATTCAGGGGAACAAACCAGAAAGGATGGTGGTTTTGAAACATGCAGCATATTTGGTGGAACACCTTTTAGGAAAGGCCTTGAATCACCTTCTGCCTGGAAATCTCCTTGGTTCTTCAACGCTTTTCTATCCAGCCCCAGACTGGATACAGAAATTACAGTTGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATTGGGTTGTTAAAACAGATCAGTGAACAAAATGCTGCTACATATGCCAATGCTCAAGAGATTTTGGGGAACGAAACTCCGAAGGCATTAAGTAGAGATGCATCTGGAAACGACAAGGATAATAAGTACCATGGTTCTCCCAATCAGCCTGGGAACCATTCTCAATTGGCTTCAAATGCATTGATAGAGCGACGCACACTTGACTTTAGCGAGTGTGGAACACCAAGCAAGGGTGATGACAACAAATCCTCGAACAAGGGTGATGACAACAAATCCTCAAGCAAGGGTGATGACAACAAATCCTTAGCTATAAGTTTCTCAAGCCCTTCGTATCTGTTGAAAGGTTGTAGATGA 3042 0.4129 MDGERSMPAPSRGQVDGAQKVKALQGRTTGPTRRSTKGQWTSEEDDILRKAVEKFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDDIIIELVNKNGAKKWSSLAKHLPGRIGKQCRERWVNHLDPTIKKEAWTQQEELALIHYHQIFGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLTSGMLNQFEPVPHVGNSNQSTRLLCSGDDNSSKMIKGEEVSESSQGSANAVHFLTARGTGSAELTGEVACVPNEECNLKDHSPSRASWSEPYYVSIDDVSICIPEISHQEACTSQFIEQQSHEPGNSISRDCHFNLGSLPNISSMVLVQDSSQLQRDCVASSEISGMVNVPLQTSEGLGASSSMGAASLDSPKPEHVMISDDECCRVLFSDSMNDGCFPLVDYNKGEDTVEFSGCTSFFCQSCNIQMSETGRSSTPPQTCPRCSNNYQGTSSSLSFHPVISACHDGVGLTANNNQLFGTMGQQLISSTPANFSYVNDISSSPCVDGMSTAVMEEQRDILNGTSEEKTNAHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDNSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLETETTTFSKNISSLDVMFGDNETEEADMPSVQKQNSSACVDDDNKENCGQVSKPNKDTVDNSQPNVKQQRLKVDASATVMEQEPSGILVEHDVNDLSLSSPDKVGLKSNRGLGSSTKTPKSMNRSLEAVPNQNSHLKLSSKIPCSRINSNSPCVRAKEHEKLSVAVTRVQAPGDNSGEQTRKDGGFETCSIFGGTPFRKGLESPSAWKSPWFFNAFLSSPRLDTEITVEDFGYLMSPGDRSYDAIGLLKQISEQNAATYANAQEILGNETPKALSRDASGNDKDNKYHGSPNQPGNHSQLASNALIERRTLDFSECGTPSKGDDNKSSNKGDDNKSSSKGDDNKSLAISFSSPSYLLKGCR* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00518 1013 CDD SANT 91 135 IPR001005 -
Lapu8g00518 1013 PANTHER MYB PROTEIN-RELATED 37 122 - -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 753 774 - -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 703 718 - -
Lapu8g00518 1013 Gene3D - 142 201 - -
Lapu8g00518 1013 SUPERFAMILY Homeodomain-like 35 98 IPR009057 -
Lapu8g00518 1013 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Lapu8g00518 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Lapu8g00518 1013 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 534 553 - -
Lapu8g00518 1013 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Lapu8g00518 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 977 992 - -
Lapu8g00518 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Lapu8g00518 1013 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 964 1013 - -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 751 774 - -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 1 42 - -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 920 950 - -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 677 718 - -
Lapu8g00518 1013 Gene3D - 89 140 - -
Lapu8g00518 1013 Pfam Myb-like DNA-binding domain 40 97 - -
Lapu8g00518 1013 CDD SANT 40 83 IPR001005 -
Lapu8g00518 1013 Gene3D - 36 88 - -
Lapu8g00518 1013 MobiDBLite consensus disorder prediction 680 695 - -
Lapu8g00518 1013 FunFam Transcriptional activator Myb isoform A 36 88 - -
Lapu8g00518 1013 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Lapu8g00518 1013 CDD SANT 143 183 IPR001005 -
Lapu8g00518 1013 FunFam Transcription factor MYB3R-2 142 204 - -
Lapu8g00518 1013 SMART sant 88 137 IPR001005 -
Lapu8g00518 1013 SMART sant 140 188 IPR001005 -
Lapu8g00518 1013 SMART sant 36 85 IPR001005 -
Lapu8g00518 1013 FunFam Transcriptional activator Myb isoform A 89 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00518 Lapu-Chr8 22245951 22254620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00518 4 974 MYB Transcription Factor Family AT4G32730 41.068 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu8g00518 Myb_DNA-bind_6 5.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00518 - K09420 gmx:100794559 1494.56