Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00512 ATGGATCAACGTGAAGAAGGCAAACAGCCATCTCAGAAAACCCCACCATCACACAATCGCCCTGACCCAGTTGATAGTTCTCATAATTTTGCCCTAGAAAATAGCTTGCAGGAGCAAAGTGGCACATTCACAACGTTCGCATCACTTGAGAGTGGAACTGAGAGCGAGTCCTCTTTTGATGACCATGATGGGGATTCTGAGTTTTTCCTGAGCCAAGAGTTTGAATCCGAACTTCAGTTTGTTGAGAGTGAAGGAAGCAATGAGGATGATGATGATGAGGAGGAGGAAATGGAAGAAGATGAGATAGATGTTGATGAGTTGACCTATGAGGAGTTGATTGAGTTGGGAGATTTTATAGGGCAAGAGAAGAGAGGGTTATCAGCAAATGAAATCAGTTCATGCTTGCATTCTCACACTTTCCATTCTGCAGAAAGCAAAAGTGGGATTGATCGCTGTGTGATTTGCCAGGTTGAATATGAAGAAGGTGAAGCCTTGGTGGCAATTCAGTGTGAGCACCCTTATCATTCAGATTGCATAAGCAAGTGGCTTCAAATCAAGAAGATTTGCCCTATATGTAACACTGAAATTTCTGCTCCCAAAATGGTCAGTTAA 612 0.4281 MDQREEGKQPSQKTPPSHNRPDPVDSSHNFALENSLQEQSGTFTTFASLESGTESESSFDDHDGDSEFFLSQEFESELQFVESEGSNEDDDDEEEEMEEDEIDVDELTYEELIELGDFIGQEKRGLSANEISSCLHSHTFHSAESKSGIDRCVICQVEYEEGEALVAIQCEHPYHSDCISKWLQIKKICPICNTEISAPKMVS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00512 203 Pfam Ring finger domain 151 193 IPR001841 -
Lapu8g00512 203 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 31 197 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lapu8g00512 203 MobiDBLite consensus disorder prediction 55 69 - -
Lapu8g00512 203 MobiDBLite consensus disorder prediction 82 104 - -
Lapu8g00512 203 SMART ring_2 152 192 IPR001841 -
Lapu8g00512 203 SUPERFAMILY RING/U-box 151 199 - -
Lapu8g00512 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Lapu8g00512 203 FunFam E3 ubiquitin ligase BIG BROTHER-related 118 199 - -
Lapu8g00512 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 199 IPR013083 -
Lapu8g00512 203 MobiDBLite consensus disorder prediction 12 54 - -
Lapu8g00512 203 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00512 Lapu-Chr8 22148270 22149029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00512 86 196 C3H Transcription Factor Family AT3G63530 47.788 1.32e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00512 K19045 - gmx:100780686 316.235