Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00498 ATGTTCATGAACATGCCTTTCAGGAACCATTTACTAGTGTTCATCATGATGGTTCTTTCTTTCATTTCTAATGTTCAAGCACAATACAGTGACACAGACACCATGCCAGATTTCCCTCAACCTGTTCGTCCAAGCAAGATGGTTGTAATAGTGGCCCTCTCAGTATTGTTCACTATATCATTTCTCTTACTTGTCTACATAAGGTTCCGCCGAACCACCACTCTTGAGCCTATCCATAGAAGGAGCCATTCACCCAATTTTCAAGCACTAACTCGGTCAAGATCAAGGCTTTCAGGGATAGACAGACAAGTGATTGAAGCACTCCCATTTTTCATGTTTTCTTCCCTTAAGGGGTCCAAACAAGGCTTGGAGTGCACTGTTTGCTTGTCACAGTTTGAGGAAACCGAGATTCTTAGACTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGTCACTCAACTTGCCCTCTTTGCAGGAATAATATTGACCCCTTAGACATCAAGAACTTCACCTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCAAATTTAACCGATGACACTAGCCTTGAAATCTTTGTTCACAGGGAACCTTCCCATCAAGGGTCATCATCATCAAGGTTCATAGGAAGCAAGTTTTGGAACTTGGGCAGGAGCAACAAAAAAAAGCTTCTCGTTGACCAAGAGGTTTATGGAACAAATGGGACACACGTGCATAAGTTCTATCACAAAATTGTTGTCTCTGATGTTGTTAGAAGAAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTATCATTGAACACTGAGATGATTCATCACATTTCAAACGGAAGATTCTCTCCCTCTGATGAAATTTTTCGTGGAAATTCAAGCCATGCCTCTATTTTCAATGAGGATGAAAGTTCATTTACGTTATTGAATACAGCTGAGAAGAGATCTATGTCGGATATTGTTCATCTTCCAAGGTTCATGGAAACATGCAATCAGAATAGAATGGAACCAGGTGAGGCATCAAGTTGGAATAGCGAGAGGGAAGAGAGGATGAGGATGATTTGGCTGGCAATTTCTCAACGAACAGTGCATTGGTTTGCAAGACAAGAAAGAATAAACTCATTAGAGGTAAAACATTTAGCTTCGAATGTTTGA 1176 0.4082 MFMNMPFRNHLLVFIMMVLSFISNVQAQYSDTDTMPDFPQPVRPSKMVVIVALSVLFTISFLLLVYIRFRRTTTLEPIHRRSHSPNFQALTRSRSRLSGIDRQVIEALPFFMFSSLKGSKQGLECTVCLSQFEETEILRLLPKCKHAFHMNCIDKWFESHSTCPLCRNNIDPLDIKNFTYSISSRSLRVPSNLTDDTSLEIFVHREPSHQGSSSSRFIGSKFWNLGRSNKKKLLVDQEVYGTNGTHVHKFYHKIVVSDVVRRSRWSDLNSSDMLSLNTEMIHHISNGRFSPSDEIFRGNSSHASIFNEDESSFTLLNTAEKRSMSDIVHLPRFMETCNQNRMEPGEASSWNSEREERMRMIWLAISQRTVHWFARQERINSLEVKHLASNV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00498 391 CDD RING-H2_EL5-like 124 167 - -
Lapu8g00498 391 SUPERFAMILY RING/U-box 104 173 - -
Lapu8g00498 391 FunFam RING-H2 finger protein ATL43 100 174 - -
Lapu8g00498 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 174 IPR013083 -
Lapu8g00498 391 SMART ring_2 125 166 IPR001841 -
Lapu8g00498 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 377 - -
Lapu8g00498 391 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Lapu8g00498 391 Pfam Ring finger domain 124 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00498 Lapu-Chr8 21864012 21865194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00498 43 391 C3H Transcription Factor Family AT2G20030 39.071 3.74e-75 236