Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00496 ATGAGAGTTTCAGCTCAGAATAATAATTCTGGGAAGGAGAGCAGCTCGACCTCGCCGTTATCGGAGGCGGCGCCGCCGTTAGAGTCCAAAACGGAGAAGCGCAACCGGGAGTCGAACAAGCACCCGGTGTACCGAGGGGTGCGCATGCGGAACTGGGGAAAATGGGTATCGGAAATCCGCGAGCCGCGGAAGAAATCGAGAATATGGCTGGGCACATTCCCAACGGCGGAAATGGCGGCGAGGGCGCATGACGTGGCAGCACTGAGCATAAAGGGGAACAGCGCCATCCTCAACTATCCCGAACTCGCCGCCTCGCTTCCTCGTCCCGTGTCGTTGGCCCCTCGCGACGTGCAAGCCGCAGCGGCCAAAGCGGCTCACATGGACTTCCCTCCTTCGTCAACGTCATTATCATCGTCGTTGTCGTCGTTGGTCTCAACAACTTCCTCCTCCTCGTCTTCATCCTCGTTGGTTTCACCCGCCGACTTGTCCACGGAGCCGGAGGAACTGAGCCAGATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTGGGAAACGAGTTTGTGTTCGCCGACTCGCAGGACACGTGGATGTATCAGCCAGCGATACCGTACGATGCTTCTCACGCCGATGATGACATTGCAGAGCCAGAGACTGGGCTTGTCACTAGTTTTAAGAGCTTTCTGTGGGATTACTGA 699 0.568 MRVSAQNNNSGKESSSTSPLSEAAPPLESKTEKRNRESNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGNSAILNYPELAASLPRPVSLAPRDVQAAAAKAAHMDFPPSSTSLSSSLSSLVSTTSSSSSSSSLVSPADLSTEPEELSQIIELPRLETSYELGNEFVFADSQDTWMYQPAIPYDASHADDDIAEPETGLVTSFKSFLWDY* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00496 232 MobiDBLite consensus disorder prediction 27 42 - -
Lapu8g00496 232 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Lapu8g00496 232 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Lapu8g00496 232 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Lapu8g00496 232 MobiDBLite consensus disorder prediction 1 42 - -
Lapu8g00496 232 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Lapu8g00496 232 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Lapu8g00496 232 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Lapu8g00496 232 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Lapu8g00496 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 185 - -
Lapu8g00496 232 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Lapu8g00496 232 MobiDBLite consensus disorder prediction 1 24 - -
Lapu8g00496 232 FunFam Ethylene-responsive transcription factor 2 42 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00496 Lapu-Chr8 21835629 21836357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00496 30 212 AP2-EREBP Transcription Factor Family AT5G11590 65.079 8.58e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu8g00496 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00496 K09286 - gmx:100305349 311.612