Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00485 ATGGGTCGTTTATCAGAGTCAAAGTTGGTTCAAGAACTGGTTCTGTACGCAGCTAGCGCAGCACTGAGTTGCCTGGTATTGTTTGTTGGCCTCCGACAACTCGACCCGAATCGCGAGGCTTCCAAAAAGGCTCTTCATCACAAAAAAGAGATAGCCAAGCGCCTCGGTCGTCCTCTGGTTAACACAAACCCTTACGAGGCGAATGGGTGGGAAAGGTCTTTTTGCATGAGTTTTCTAGTTGGATTTCTAGTTTCATGTGCCTCTATTCAAAATGAGTTTTCTGATGTCATAGCATGCGATGTCATCAATCCTGACCACATTCATGTGGAGTTTAACTCTATTGGAGGACTGAAAACGACAAAACAAGCTCTGTATGAACTTGTTATTCTGCCTTTAAGAAGACCTGACTTGTTTTCTCATGGTAAACTTCTTGGGCCTCAAAAGGGTGTCCTGTTGTATGGACCACCTGGCACAGGGAAGACCATGCTTGCCAAGGCTATTGCTAAGGAGTCTGGAGCAGTTTTCATCAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAACTTGTGACTGCCATATTTAGCCTAGCTCATAAGCTCCAGCCTGCTATCATATTCATTGATGAAGTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTTATGGCCCTATGGGATGGTTTTACTACTGATCAGAATGCTCAAGTTATGGTCCTTGCTGCTACAAATCGTCCTTCAGAACTTGATGAAGCAATACTCCGACGACTTCCTCAAGCATTTGAAATTGGTATTCCGGACCAAAGGGAAAGGGCTGACATATTGAATGTTATCTTGAAGGGTGAGAGGGTTGAAGAAAACATCGACTATGACCATATAGCTTTCTTATGTGAAGGTTACACTGGTTCGGATCTATTTGACCTGTGCAAGAAAGCTGCATATTTTCCAATTAGAGAACTGCTGGATGAAGAGAAGAAAGGGAAAAATTCTTCTGCTCCTCGACCATTGTCTCTGGTAGACTTGGAGAAGGCCCTGGCCACTTCACGAAAGACTACTGTTGCTGCATTTGAATACAATGGATTAAGTGCAGATACTCTAAGATGGGCAAGGCAGAGGGGACCTGGTGGTGATTATCAGGTTCAAGCTGCAATTAATGAACTCTCTAAGTTTGTGGTATCTCACATGACTAGTCGCCAGCCAGATGCCAAAGATCTTTAA 1263 0.4378 MGRLSESKLVQELVLYAASAALSCLVLFVGLRQLDPNREASKKALHHKKEIAKRLGRPLVNTNPYEANGWERSFCMSFLVGFLVSCASIQNEFSDVIACDVINPDHIHVEFNSIGGLKTTKQALYELVILPLRRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVTAIFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERADILNVILKGERVEENIDYDHIAFLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKNSSAPRPLSLVDLEKALATSRKTTVAAFEYNGLSADTLRWARQRGPGGDYQVQAAINELSKFVVSHMTSRQPDAKDL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00485 420 Gene3D - 281 363 - -
Lapu8g00485 420 FunFam ATPase family AAA domain-containing protein 1 108 285 - -
Lapu8g00485 420 Gene3D - 108 367 IPR027417 -
Lapu8g00485 420 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lapu8g00485 420 SMART AAA_5 146 282 IPR003593 GO:0016887
Lapu8g00485 420 Pfam AAA+ lid domain 302 338 IPR041569 -
Lapu8g00485 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 338 IPR027417 -
Lapu8g00485 420 ProSitePatterns AAA-protein family signature. 252 271 IPR003960 GO:0005524|GO:0016887
Lapu8g00485 420 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 88 393 - -
Lapu8g00485 420 CDD RecA-like_ATAD1 113 278 - -
Lapu8g00485 420 Pfam ATPase family associated with various cellular activities (AAA) 150 279 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00485 Lapu-Chr8 21502846 21512372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00485 105 344 Calmodulin-binding Proteins AT3G56690 34.979 1.19e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00485 K22530 - gmx:100791694 689.878