Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00479 ATGGAAATAGGAGTAATAACAATACCCATCATCGCCATTCTTCTCTTTCTACAAACTCGCGCCACCGCTCTTATCTCCACCTGCCCTGCTTCCTCCTGCGGCAACATTCCCAACATAAGTTACCCCTTTCGACTCACCACTGACCCATCTCACTGCGGCGACACGAGGTACCAATTGCACTGTGAGAACAACGCAACTCTTTTAACCCTGTTTTCTGGCAGATACAAAGTCCAAGAAATCGACTACAAGAGACACAAAATCCGAGTGCATGATGCGGAGGACGCTGCTTGCTCCGCCATGCCTCGCTATTTCTTGTACTCAGGCAATTTCAGTAACCCCTTCGTGGGTCCTGGAAGGGATCCTCTGAAATTGGACCCATATGATCAACCGTCTGTAGCTTATTTCAACTGTAGCCGTCCAATCACCGATGATCCTAGATATGTTGCTGTGGATGTCAGTGGTTGTGACCTCGGAGGACACGTGTATGCTGTCGTTAAGGATTCGGGAAATGGTTTTGGGGTGAAGGACATCAAGGTTGGGTGCCAACTGAAGTTGGCCACTTTTGCTGCTGTGAGAGACAAGAATTCCAACAAAGCAGTTTCATATGGTGAAATCTACGACATGGTTTTACAGGGATTTGAGCTGTCTTGGTTGGATACTATTTGTGAAGATCGATGCGGAAAGGGAATTGAGTGCAGTGTTGTGGATGAATCCACAGGTGAAGTCCAATGTAACCAAGACTGCCGGTATGTCTATCAACCCAACCAAGTCACATACGTATGCGGCGGTGATAATGCAGGAAACATAATTGTCTCTATAGTTTTTTTTTGCATCGGTGTTTACAGAGGATTGATGCAAAATTTTGGCTTGAATAAAGCTACAGGATATGACGATGAGAGAGTAGCTGAAATAGGCAAAAGCACAGGAAGGTATATCCTGCCATACTTTCTAATACGATTTCTATTTGGTTTAATAGCTTTTGTTATGTTGTTGATCTATAAATGGGGAAGAAGACATAAATCGAAGTATGAAAATATTGAAGCTTTTCTAGAAGGAAACACCCTCATGCCAATAAAATACTCATACAAAGAAATAAAGCACATGACTTGGGGTTTTAAGGTAAAGTTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAAAGTTGCGTAGTGGTTCATTTGCTGCGATAAAAATGTTGAGTAAATCAAAGTCTAATGGGCAAGACTTCATTAATGAAGTTGCTACTATTGGAAGAATACATCATACAAATGTGGTGAGACTTATTGGATTTTGTGTTGAACCATCAAATCACGCTCTGGTTTATGAATTCATGCCTAATGGTTCTCTTGACAAATATATTTTCTCCAAACAAGATAGTATCTCTTTAACTCACACACAAATATATGAGATATCTCTTGGAGTGGCTCGTGGCATTGCTTATTTGCATGAAGGTTGTGATATGCAAATTTTGCATTTTGACATCAAACCACATAACATTCTTCTAGATGAAAACTTTATTCCAAAGGTTTCAGACTTTGGTTTGGCAAGGCTTTGTCCTACAGACAAAAGCATTATCACTTTGACAGCTGCAAGAGGAACAATTGGATACATGGCACCTGAGTTATTTTATCATAATATTGGAGGAGTATCATACAAGGCAGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATAGCAAATAAAAAAAGAAATTTTAATCCAAATATAAATGATTCGGACGAACATTTTTTTCCTTATTGGATATATGATCAATTGAGTGGAGAAAGTGAGATAGAAAAAGAAAATGTTATCAAGCAAGAATACAATGACGAAGTAAAGAAGATGTTTTTGGTAGCATTATGGTGTATACAAACGAAACCAAGTGGTCGTCCTTCAATGAACAAAGTAGTAGAGATGTTAGAAGGAGAACTTGAGAATATTGAAATGCCTCCAAAACCTTCCCACTATTCAACATATGATCTTAACATTAAATCTTCTTTGACCCTTTCAAATGATTCTAATGGATCTACAAGTTCTATGGAGGAAAGTATGGAAGAGAGTACATATTATATTTCTTCTTAG 2085 0.3899 MEIGVITIPIIAILLFLQTRATALISTCPASSCGNIPNISYPFRLTTDPSHCGDTRYQLHCENNATLLTLFSGRYKVQEIDYKRHKIRVHDAEDAACSAMPRYFLYSGNFSNPFVGPGRDPLKLDPYDQPSVAYFNCSRPITDDPRYVAVDVSGCDLGGHVYAVVKDSGNGFGVKDIKVGCQLKLATFAAVRDKNSNKAVSYGEIYDMVLQGFELSWLDTICEDRCGKGIECSVVDESTGEVQCNQDCRYVYQPNQVTYVCGGDNAGNIIVSIVFFCIGVYRGLMQNFGLNKATGYDDERVAEIGKSTGRYILPYFLIRFLFGLIAFVMLLIYKWGRRHKSKYENIEAFLEGNTLMPIKYSYKEIKHMTWGFKVKLGQGGFGLVYKGKLRSGSFAAIKMLSKSKSNGQDFINEVATIGRIHHTNVVRLIGFCVEPSNHALVYEFMPNGSLDKYIFSKQDSISLTHTQIYEISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLARLCPTDKSIITLTAARGTIGYMAPELFYHNIGGVSYKADVYSFGMLLMEIANKKRNFNPNINDSDEHFFPYWIYDQLSGESEIEKENVIKQEYNDEVKKMFLVALWCIQTKPSGRPSMNKVVEMLEGELENIEMPPKPSHYSTYDLNIKSSLTLSNDSNGSTSSMEESMEESTYYISS* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00479 694 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Lapu8g00479 694 SMART serkin_6 370 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00479 694 SUPERFAMILY Protein kinase-like (PK-like) 357 642 IPR011009 -
Lapu8g00479 694 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Lapu8g00479 694 Gene3D Phosphorylase Kinase; domain 1 347 444 - -
Lapu8g00479 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Lapu8g00479 694 MobiDBLite consensus disorder prediction 671 694 - -
Lapu8g00479 694 PANTHER RUST RESISTANCE KINASE LR10-RELATED 342 663 IPR045874 GO:0004672
Lapu8g00479 694 Gene3D Transferase(Phosphotransferase) domain 1 445 653 - -
Lapu8g00479 694 FunFam serine/threonine-protein kinase PBS1-like 338 444 - -
Lapu8g00479 694 FunFam PR5-like receptor kinase 445 653 - -
Lapu8g00479 694 ProSiteProfiles Protein kinase domain profile. 370 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00479 694 Pfam Protein kinase domain 373 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00479 Lapu-Chr8 21433870 21442430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00479 29 672 Receptor kinase-like Gene Family AT5G38260 34.933 1.37e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00479 Pkinase 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00479 - - pvu:PHAVU_001G075800g 934.865