Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00478 ATGGAAAATGAAGGGTCGAAGAGGTGCTCTTTCTCTGCACGCACTCTGCTGTCAATATTGGCTACAATTGTTCTCCTTTTCCAACCAGATTACTGCATCGCTAAGCGACACCCACCATGTCCTCCTTCTTCATGCGGCCAAATTGGGAACATATCATACCCATTTCGCCTCAAAAGCGACCCGAGCCAATGCGGCGACCCGAGGTACGAGTTAGACTGCGTTAACAACACCACACTCTTAACCTTGTTCTCTGGAAAATTCCATGTACAAGAAATCGACTACACGCGATACAAAATCGTAGTTAGTGACCCGGGTCAAGAGGAGGAGGTGGCGGCTAATTGCTCCTTCATCCCTCGCAATTTCTTAACGGACCGTAATTTCAGGCCCACGGGCCTGGTTGGCCCAGATGACTTCGGATCGCAGCCGTTCACTTGGGAACACTGGTATACTTTCAGAATAGGGTACTTCAACTGCGTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGAGAGGAGTGGATGCGGCAGGCGAGGACACGTGTACGCTGTTTGGGAACCGTCGCTGTATGGGTGTCGTGTGAAGGACATCAAGGTTGGGTGCGAGCTAATGGCGGCTACGGTGGTTGATTGGTCACCGAAGGAGAATTTTAGCTACGATGAGATCCATCGCGTGATAAGCAAGGGAATTCAGTTGTCGTGGTTGGGTGTTATTTGCGAGGATCGTTGTGGAAGGGGAACAGAGTGTAAGGTTATCAATGAATCCAACGGAGAGGTCGAGTGTGAGAACCATTACTGCCATTACGCATACCAGACCACCGATAAGTGCGAACCTTGGCAACAGATTTTTGGCTATATTCGAGCTTATTTTAGAGGCGTTATTTTTGGAATAGGTAGCATAATAACATTCAACACGAAACAATTGGATAACCCAGTTGGACTACAATATTTTGATGGAGGAACATTCATAGGACGAACAATCATACCAATGGTTTTGGTTGCCAGATATCTATTTGGGGTTGTACTTATTCTTGTGCTATTCATCTACAAATGGCGACGAAGACATTTTTCAATATATGAAAATATTGAAAATTTCTTGCTAGATAGCCATCTAAATCCCATTAGGTATGAATACAAAGAAATAAAAAAAATGACTGGAGGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGTGTTGTATATAAAGGAAAACTCATAAGTGGGTTGGATGTTGCAGTAAAGATGTTGAGCAAATCCAATGATAATGGACAAGATTTTATTAATGAAGTAGCTACCATTGGAACAATACATCATGTAAATGTGGTGCGTCTTATTGGATATTGTGTTGATGGAAGAAAACGTGCTCTGGTTTATGAGTTTATGCCAAATGGATCATTAGATAAATACATTTTCTCCAAAGAAGAAAACATCCATTTAAGCTATGAGAAAATATATGAAATATCTCTTGGAATAGCAGGTGGAATTGCATATTTGCATGAAGGTTGTGATACGCAAATTTTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTATTCCAAAGATTTCAGATTTTGGACTTGCAAAGTTGCATGTTGAAAATGATGACGTTGTCAAGATGACTGCAGCAAGAGGAACATTGGGTTATATGGCTCCCGAGTTGTTTTACAAAAATATGGGAGGAGTATCTTATAAAGCTGATGTATATAGTTTTGGAATGCTTTTAATGGAAATGGCAAGTAGGAGGAGAAACTCAAATCCTCGTGCAGAGCATTCAAGTCAACATTACTTTCCTTTTTGGATTTATGATCAATTTCAGGAAGAGAAAAATATTGACATGGAAGATGCTTCAGAAGAGGATAATATTCTAGCTAGAAAGATGTTCTTGGTAGCACTCTGGTGTATTCAATTAAATTCGAGTGATCGTCCTTCAATGATTAAGATAATCGAGATGCTTGAAGGGATGATTGAAAGCCTTGAATTGCCTCCAAGGCCTTCTTTTTACAAAAATGAAACATACAAACATGATGATATTAGCTCAGACTTCACTAATTCTACTAATTCTAATAGTTAG 2088 0.4047 MENEGSKRCSFSARTLLSILATIVLLFQPDYCIAKRHPPCPPSSCGQIGNISYPFRLKSDPSQCGDPRYELDCVNNTTLLTLFSGKFHVQEIDYTRYKIVVSDPGQEEEVAANCSFIPRNFLTDRNFRPTGLVGPDDFGSQPFTWEHWYTFRIGYFNCVNPVSDDPRYVKVERSGCGRRGHVYAVWEPSLYGCRVKDIKVGCELMAATVVDWSPKENFSYDEIHRVISKGIQLSWLGVICEDRCGRGTECKVINESNGEVECENHYCHYAYQTTDKCEPWQQIFGYIRAYFRGVIFGIGSIITFNTKQLDNPVGLQYFDGGTFIGRTIIPMVLVARYLFGVVLILVLFIYKWRRRHFSIYENIENFLLDSHLNPIRYEYKEIKKMTGGFKVKLGQGGFGVVYKGKLISGLDVAVKMLSKSNDNGQDFINEVATIGTIHHVNVVRLIGYCVDGRKRALVYEFMPNGSLDKYIFSKEENIHLSYEKIYEISLGIAGGIAYLHEGCDTQILHFDIKPHNILLDDNFIPKISDFGLAKLHVENDDVVKMTAARGTLGYMAPELFYKNMGGVSYKADVYSFGMLLMEMASRRRNSNPRAEHSSQHYFPFWIYDQFQEEKNIDMEDASEEDNILARKMFLVALWCIQLNSSDRPSMIKIIEMLEGMIESLELPPRPSFYKNETYKHDDISSDFTNSTNSNS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00478 695 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Lapu8g00478 695 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Lapu8g00478 695 PANTHER RUST RESISTANCE KINASE LR10-RELATED 360 677 IPR045874 GO:0004672
Lapu8g00478 695 SMART serkin_6 387 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00478 695 Gene3D Phosphorylase Kinase; domain 1 365 461 - -
Lapu8g00478 695 Pfam Protein tyrosine and serine/threonine kinase 390 657 IPR001245 GO:0004672|GO:0006468
Lapu8g00478 695 SUPERFAMILY Protein kinase-like (PK-like) 372 658 IPR011009 -
Lapu8g00478 695 Gene3D Transferase(Phosphotransferase) domain 1 462 668 - -
Lapu8g00478 695 ProSiteProfiles Protein kinase domain profile. 387 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00478 695 FunFam PR5-like receptor kinase 462 668 - -
Lapu8g00478 695 FunFam serine/threonine-protein kinase PBS1-like 360 461 - -
Lapu8g00478 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00478 Lapu-Chr8 21424880 21428153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00478 23 673 Receptor kinase-like Gene Family AT5G38260 34.933 6.72e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00478 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00478 - - gmx:100820366 1090.49