Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00476 ATGGAAAATGAAGGGTCGAATAGGTGCTCTTGCTCTGCACGCACTCTGATGTCAATATTATTGGCTACAATTGTTCTCCTTTTCCATCTAGAGTACTGCATCGCTAAGCGACACCCACCATGCCCTCCTTCATCATGCGGCCAAGTGGGCAACATATCATACCCATTTCGCCTCAAAGGCGATCCAAGCCGTTGCGGCAACCCAAGGTACGAGTTAGACTGCGTTAACAACGCCACACTCTTAACCTTGTTCTCTGGAAAATTCCATGTACAAGAAATCGACTACAAGCGATACAAAATCCTAGTTAGTGACCCGGGTCAAGAGGAGGAGGAGGAGGCTAATTGCTCCTTCATCCCTCGCAATTTCTTAACGGACCGAAATTTCCAGGCAGAGTTTGGTCCAGACGATTTCGGATCACAGCCGTTCACTTATGAGCCCTTGGTAATTTTCAGAATAGGGTATTTCAACTGCGTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGACAGGGATGGATGTGGCAGCGGCGGAGGGCACGTGTATGCTGTAGTGGACTCAGGGTGGCGAACGTTGGGTGTGATGGACATCAAGGTTGGGTGCGATCTAATGGTGGCAACAGTTTTGACACCGAAGCAGAATGTTACCTACAAGTGTGATGCTGTGGGTGAGTGCTATACCTCAGTTACAGTGCTTGATCGGATACCTGAGGGGAGGAATGTTAGCTACGATGAGATCCATGGGTTAATAAGCGAGGGAATTCAGTTGTCGTGGTTGGGTGTTATTTGCGAGGATCGATGTGGAAGGGGAACAGAGTGTAAGGTTATCAATGAATCCAACGGAGACTTCCAGTGTAAGAAACATTACTGTCATTATGCCTACCACACCACTGCCAAGTGCGAACCTTGGCAACAGATTTTGGGCTATATTCGAGCTTATCTCAAAGGTGTTATTTTTGGAATAGGTAGCAGAATAACATTCAGTACAAAACAATTGAATAACCCAGTTGGATGGCAATATTTTGATGGAGGAATATTCATAGGACGAAATATTATATCAATATTTTTGGTTGCCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGTTATTGATCTACAAATGGCGACGAAGACATTTTTCAATATATGAAAATATTGAAAACTTCTTGCTAGATAGTCATCTAAATCCCATTAGGTACGAATACAAAGAAATAAAAAAAATGACTAGTGGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTATATAAAGGAAAACTCCAAAGTGGGTTGGAAGTAGCAGTGAAGATGTTGAGAAAATTCAATGATAATGGACAAGATTTTATGAATGAAGTAGCTACAGTTGGAAGAATACATCATGTAAATGTGGTGCGTCTTATTGGATATTGTGTTGATGGAAAGAAGCGTGCTCTAGTTTATGAATTTATGACAAAGGGATCATTGGATAAATACATTTTCTCCAAAGAAGAAAGCATCACTTTAAGCTATGAGAAAATATATGAAATATGTCTTGGAATAGCAGGTGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTCTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAAGTTTCAGATTTTGGACTCGCAAAGCTACAAGCTATAAATGATGACATTGTTAATATGACTGCTGCAAGAGGAACACTGGGTTATATGGCTCCTGAGTTGTTTTACAAAAATATGGGTGGAATATCATATAAAGCTGATGTATATAGTTTTGGAATGCTTTTAATGGAAATGACAAGTAGGAGAAAGAACTCAAATCCTCATGCAGAGCATTCAAGTCAAGATTATTTTCCCTTTTGGATTTATGATCAATTTAAAAAGGAGAATTTTTTTAACATGGAAGATGCTTCAGAAGAGGACAATATTCTAGTTAAAAAGATGTTCTTGGTTGCACTTTGGTGTATTCAGTTAAATCCAAGTGATCGTCCTTCAATGAACAAGGTAATGGAAATGCTTGAAGGGGTGATTGAAAGCCTTGAATTGCCTCCAAGGCCTTCCTTTTATAGAAATGAAACATACACACCTGATGATATTAGCTTTGACTTCACTAATTCGAGTTACTCTAATAGTTATCCTTGTGAAAGCTTAACATCTAGTTCACCAAAAGTATCGACAAAGACATAG 2211 0.3967 MENEGSNRCSCSARTLMSILLATIVLLFHLEYCIAKRHPPCPPSSCGQVGNISYPFRLKGDPSRCGNPRYELDCVNNATLLTLFSGKFHVQEIDYKRYKILVSDPGQEEEEEANCSFIPRNFLTDRNFQAEFGPDDFGSQPFTYEPLVIFRIGYFNCVNPVSDDPRYVKVDRDGCGSGGGHVYAVVDSGWRTLGVMDIKVGCDLMVATVLTPKQNVTYKCDAVGECYTSVTVLDRIPEGRNVSYDEIHGLISEGIQLSWLGVICEDRCGRGTECKVINESNGDFQCKKHYCHYAYHTTAKCEPWQQILGYIRAYLKGVIFGIGSRITFSTKQLNNPVGWQYFDGGIFIGRNIISIFLVARYLFGVVLILVLLIYKWRRRHFSIYENIENFLLDSHLNPIRYEYKEIKKMTSGFKVKLGQGGFGAVYKGKLQSGLEVAVKMLRKFNDNGQDFMNEVATVGRIHHVNVVRLIGYCVDGKKRALVYEFMTKGSLDKYIFSKEESITLSYEKIYEICLGIAGGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLQAINDDIVNMTAARGTLGYMAPELFYKNMGGISYKADVYSFGMLLMEMTSRRKNSNPHAEHSSQDYFPFWIYDQFKKENFFNMEDASEEDNILVKKMFLVALWCIQLNPSDRPSMNKVMEMLEGVIESLELPPRPSFYRNETYTPDDISFDFTNSSYSNSYPCESLTSSSPKVSTKT* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00476 736 Gene3D Phosphorylase Kinase; domain 1 389 485 - -
Lapu8g00476 736 ProSiteProfiles Protein kinase domain profile. 411 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00476 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Lapu8g00476 736 FunFam serine/threonine-protein kinase PBS1-like 384 485 - -
Lapu8g00476 736 SMART serkin_6 411 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00476 736 PANTHER RUST RESISTANCE KINASE LR10-RELATED 384 700 IPR045874 GO:0004672
Lapu8g00476 736 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Lapu8g00476 736 Pfam Protein tyrosine and serine/threonine kinase 414 681 IPR001245 GO:0004672|GO:0006468
Lapu8g00476 736 ProSitePatterns Protein kinases ATP-binding region signature. 417 439 IPR017441 GO:0005524
Lapu8g00476 736 SUPERFAMILY Protein kinase-like (PK-like) 396 682 IPR011009 -
Lapu8g00476 736 Gene3D Transferase(Phosphotransferase) domain 1 486 690 - -
Lapu8g00476 736 FunFam PR5-like receptor kinase 486 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00476 Lapu-Chr8 21396272 21402176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00476 18 720 Receptor kinase-like Gene Family AT5G38260 32.591 7.26e-109 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00476 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00476 - - gmx:100820366 1034.25