Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00460 ATGGAATCACCCAACTCTTCCCCCATTTTCCCACAATTCACCCTCGACACCGCCAAAAACAATAATAACCCTGACCACTTCATCGTCGAGGACCTCTTGGATTTCTCCAACGACGATGCTGTCATCGCCGACGCCATATTCGATTCTCTCCCCGTCAACTCCACCGACTCTTCCAACGTAACCGCCGTTGATAGCTGCAACTCCTCCTCCTTTTCCGGCTACGACCCCCATATCATTCCCGACATTGGTAGCCGGAATCTCTCCGATGATCATTTTTCCGGTGACCTATGCGTACCGTATGATGATATAGCGGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCGAGCGAGGACCTGCAGAAGATGCAGCTCATATCAGGCATGAATGCCAGAAACGACCACGTATCAAAGGCCCGCGGGTTCCACTCCGAGCCCACAAGAAGCGGGTCTCACTCCGAGACCTCCAGAAACAGCCCGATATTCAATTCGGAAGTATCTGTTCCTGCCAAGGCCCGTAGCAAAAGATCCCGTGGGCCTCCATGCAACTGGGCCTCGCGCCTCCTCGTCCTGTCCCCAACGACGTCGTCGTCTTCAGACCCTGAGATCGTTGCTCCTGTCCCCACTCATCCTGGCACAAAAAAGCCCCCAAAGGCAACACCGAGAAAGAAGGACAGCGGGGATGGCAGTGGCGGGGACGGGCGCAGGTGCCTGCATTGCGCCACGGACAAGACACCGCAGTGGCGGACCGGGCCCATGGGCCCAAAGACGTTGTGTAATGCATGCGGCGTAAGGTACAAGTCGGGGCGGCTGGTGCCCGAGTACAGGCCCGCGGCAAGCCCAACGTTTGTTCTGACTAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCAGGCCCAGCAACACCAACAACAGCAATTCCTACCACACCACCACCACCATCATCATCATCATCAGAACATGCTGTTAGACGTATCCAACAGTGAAGATTACTTGGTTCACCAACACATGGGACCCGATTTCCGGCAGCTTATCTAG 1068 0.5543 MESPNSSPIFPQFTLDTAKNNNNPDHFIVEDLLDFSNDDAVIADAIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPHIIPDIGSRNLSDDHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVSKARGFHSEPTRSGSHSETSRNSPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSSDPEIVAPVPTHPGTKKPPKATPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVQAQQHQQQQFLPHHHHHHHHHQNMLLDVSNSEDYLVHQHMGPDFRQLI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00460 355 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Lapu8g00460 355 MobiDBLite consensus disorder prediction 220 238 - -
Lapu8g00460 355 MobiDBLite consensus disorder prediction 150 167 - -
Lapu8g00460 355 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Lapu8g00460 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Lapu8g00460 355 MobiDBLite consensus disorder prediction 195 238 - -
Lapu8g00460 355 Gene3D - 235 318 IPR013088 GO:0006355|GO:0008270
Lapu8g00460 355 FunFam GATA transcription factor 229 316 - -
Lapu8g00460 355 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Lapu8g00460 355 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Lapu8g00460 355 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Lapu8g00460 355 PIRSF Txn_fac_GATA_plant 10 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu8g00460 355 PANTHER GATA TRANSCRIPTION FACTOR 20 315 - -
Lapu8g00460 355 MobiDBLite consensus disorder prediction 142 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00460 Lapu-Chr8 21103117 21104997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00460 27 355 C2C2-Gata Transcription Factor Family AT5G25830 50.575 1.13e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu8g00460 GATA 3.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00460 - - gmx:100800146 521.546