Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00447 ATGTCTACAACCGCTGGCCAAATCATCAAGTGCAAAGCGGTTGGTGGTTACATTGTCACAGCTGCGATTTCATGGGAGGCTGGGAAGCCACTGGTAATTGAAGAGGTAGAGGTGGCGCCACCCCAAGCTGGGGAAGTCCGTTTGAAAATCCTCTACACCTCTCTTTGCCACACCGATGTTTACTTTTGGGATCCCAAGGGCCAGACTCCATTGTTTCCTCGTATTTTTGGCCATGAAGCTTCAGGTGTTGTGGAGAGCATTGGCGAGGGTGTGACTCATGTGCAACCAGGAGACCATGCCCTCCCTGTGTTCACAGGAGAGTGTGGGGAATGCGCACATTGTAAGTCAGAAGAGAGCAACATGTGTGATCTCCTCAGGATCAACACCGATAGGGGTGTCATGATCAACGATGGTCAATCAAGGTTCTCTAAGGATGGAAAACCCATATACCATTTCTTGGGAACCTCGACATTCAGTGAATACACTGTTGTCCACGCTGGATGTGTTGCAAAGATCAACCCAGAAGCTCCACTTGACAAAGCTTGCGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGTGCTACAGTTAATGTTGCAAAGCCAAAACCTGGTTCCTCCATTGCCATATTCGGACTTGGAGCCGTTGGCCTTGCGGCTGCAGAAGGGGCAAGGATTTCAGGTGCTTCAAGAATTATTGGTATTGATTTAGTTCCGGACAGATTTGAAGAAGCTAAGAAGTTTGGGGTTAATGAGTTTGTGAATCCAAAGGATCATGATAAACCTATACAACAGGTAATTGCTGACATGACCAATGGAGGTGTGGATCGGGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATTTCGGCTTTTGAATGTGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGCCTAGTAAAGATGATGCATTCAAAACAGCTCCTGTGAATTTCTTGAATGAGAGGACTCTTAAAGGTACCTTTTATGGTAACTACAAACCCCGATCTGATATTCCTTCTGTTGTGGAAAAGTACATGAGCGGGGAGCTAGAAGTTGATAAATTCATCACTCACTCTGTTCCCTTCTCAGAGATCAACAAAGCCTTTGAATACATGCTAAATGGACAGTCCATTAGGTGTATTATCCGCATGCAAGAGTAA 1167 0.4627 MSTTAGQIIKCKAVGGYIVTAAISWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWDPKGQTPLFPRIFGHEASGVVESIGEGVTHVQPGDHALPVFTGECGECAHCKSEESNMCDLLRINTDRGVMINDGQSRFSKDGKPIYHFLGTSTFSEYTVVHAGCVAKINPEAPLDKACVLSCGICTGLGATVNVAKPKPGSSIAIFGLGAVGLAAAEGARISGASRIIGIDLVPDRFEEAKKFGVNEFVNPKDHDKPIQQVIADMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTAPVNFLNERTLKGTFYGNYKPRSDIPSVVEKYMSGELEVDKFITHSVPFSEINKAFEYMLNGQSIRCIIRMQE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00447 388 Pfam Zinc-binding dehydrogenase 214 341 IPR013149 -
Lapu8g00447 388 Pfam Alcohol dehydrogenase GroES-like domain 44 171 IPR013154 -
Lapu8g00447 388 Gene3D - 191 329 - -
Lapu8g00447 388 SUPERFAMILY GroES-like 336 385 IPR011032 -
Lapu8g00447 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Lapu8g00447 388 CDD alcohol_DH_plants 9 385 - -
Lapu8g00447 388 PANTHER ALCOHOL DEHYDROGENASE 7 384 - -
Lapu8g00447 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 351 IPR036291 -
Lapu8g00447 388 SUPERFAMILY GroES-like 19 195 IPR011032 -
Lapu8g00447 388 FunFam Alcohol dehydrogenase class-P 191 329 - -
Lapu8g00447 388 FunFam alcohol dehydrogenase 1-like isoform X1 27 190 - -
Lapu8g00447 388 Gene3D - 27 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00447 Lapu-Chr8 20735653 20738799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00447 45 372 Monolignol Biosynthesis Gene Families AT1G72680 25.076 8.38e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00447 K18857 - gmx:100800668 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00447 8 20735653 20738799 Lapu8g00447 8 20735653 20738799 ECH
Lapu6g00416 6 4166819 4170305 Lapu8g00447 8 20735653 20738799 PCT