Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00444 ATGCCGTCATGGGTTTTTATTAAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTAGATGCAGCTTTGTTCTTGTCGCTGTCTAAAATGCTTCATAGTTTAAAAAAAATCTGTGGCAAACCAAGGCCCGTCCTAGCTCTTAGCTGTGTGTCAGATAGTATGCAGACGATAGATGCGCTCCTGACGTGCAAGATGAAAAGAAAAAGGAATGAGAATAGTTCACTTATGGGGAAACCTGCTCTGACATCTCATCAAGAAGAAGGTTGTCATGATACAGACAGTCTATCATTTACAGAGCTTACAAAAGATATACCTTTCCCTGTTACATACTACACACTAACTGAGAAAGAGCTGGAAGAGAATGGGTATTCTTTTAATGAACCAGGTTTTCTTTCGACTTTGCCTGCACCTTCAGGATCTCCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCGTAACAAAGGAAGGTTTTGAGCTGACAAGAATTACTCTAGTGGACGTCAAAGGACAGGTTTTGATAGATAGATTGGTTAAACCGTCAAATGCTATCGTTGACTACAACACAAGATTTAGTGGAATAACGCCTGAGATGTTAAATGGGGTGACAACAAGTCTGAGAGACATTCAGGAAGTCTTCCTAAAGTTTGTTTACAAGGAGACTATCCTTGTTGGGCATTCTCTGGAAAATGATTTATTAGCATTGAAGATATCCCATGACCTAGTCATAGACACAGCAGTGTTGTACAAACATCCCCGAGGAACATCTCATAAAAAAGCTCTACGGTATCTTGCTAAGAAATTTCTTTCAAGGGAGATACAACAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCCACCCTTGAATTGGCACTATTGAAGATCAGAAATGGGCCTGACTTTGGTTCCCCTCCATCCTTTACAAAGAAAAAGTTCCTTTCTATTTTGAGTGAGTCTGGCAAAACTTCGTCATTGATTGATGATATATCCATAGTAAAACGGTATGCCTCCGAGTCCTCTCATGCAATTCCGGTGATCTCCGATGATGAAGCACTTGCAAAGACAAACAAGGAGGTGAAGAATGACAAGGTACATTTTATCTGGACACAGTTTTCGGAGCTACATTCATACCTGAAGAAGCAAGCTGAAGATTCTGAGAGCTTGAATGAAAGACTTGCAGAGATGATGGCATTGCAAACATGTCAGAACAATTCTGCTAAACAGAAAGGTTTCAAGTTGAAAGCACCTGCTGAACTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCATAACCTCTATCTGTCATTACCCACAAATGCTATGATGATAATTTTTACTGGTCACGGAGACACTGCTATTGTCCGCAGGTTGAGGAGAATGCTTGCAGAGCAGAATAAAATTGATTTATGTCGTGAAAAGATTGTGGAGATTTTGGCAGAATTTCAGGCTCAAGCTGAAGTAGCCTTGTGTTTTGTAGGCGTAAAGCATTGA 1518 0.4051 MPSWVFIKNKPLIPKVVMLYMPGLDAALFLSLSKMLHSLKKICGKPRPVLALSCVSDSMQTIDALLTCKMKRKRNENSSLMGKPALTSHQEEGCHDTDSLSFTELTKDIPFPVTYYTLTEKELEENGYSFNEPGFLSTLPAPSGSPFYEMLALDCEMCVTKEGFELTRITLVDVKGQVLIDRLVKPSNAIVDYNTRFSGITPEMLNGVTTSLRDIQEVFLKFVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGTSHKKALRYLAKKFLSREIQQSGNGHDSIEDARATLELALLKIRNGPDFGSPPSFTKKKFLSILSESGKTSSLIDDISIVKRYASESSHAIPVISDDEALAKTNKEVKNDKVHFIWTQFSELHSYLKKQAEDSESLNERLAEMMALQTCQNNSAKQKGFKLKAPAELKEILARMDARIHNLYLSLPTNAMMIIFTGHGDTAIVRRLRRMLAEQNKIDLCREKIVEILAEFQAQAEVALCFVGVKH* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00444 505 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 313 IPR047021 GO:0004527
Lapu8g00444 505 Gene3D - 148 308 IPR036397 GO:0003676
Lapu8g00444 505 SMART exoiiiendus 149 308 IPR013520 -
Lapu8g00444 505 FunFam RNA exonuclease NEF-sp 147 310 - -
Lapu8g00444 505 CDD REX1_like 151 300 IPR034922 -
Lapu8g00444 505 Pfam Exonuclease 152 298 IPR013520 -
Lapu8g00444 505 Coils Coil 386 406 - -
Lapu8g00444 505 SUPERFAMILY Ribonuclease H-like 150 303 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00444 Lapu-Chr8 20684255 20693989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00444 143 298 C2H2 Transcription Factor Family AT3G27970 28.814 6.24e-08 52.8