Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00440 ATGGACAATTCATCACCAGCTGCTGAGAACATACCCAATTATCGTGTTAATCACTGGAAGGAAGATGAGGATGAAAAGCTAAGCCAACTTGTTCAAGAACATGGTCCCCAAGATTGGAATGCAATTGCTCAACATATACAAGGACGAACTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTGATCCTAGAGTTAACAGAAACCCTTTTACTAAAGAAGAAGAGGAGAGGCTAATTGCAGCTCGAGAGGTTTATGGAGCAAAATGGGCAACCATAGCCAAACTCTTCCACGGGAGAACCGATAATGCCTTGAAAAACCATTGGCATGTTTTGATCGCACGAAAGCGAAAGGAAGCCAATAATGGAAGCTTGAAAGGGCTGATTAACGTTTCAAACTCTTCCTCCTCCACCATTACTCCTCGTCATGAAACATTCTTTGGCAAGTTGAACTTCAACGCTGCCCAAAGGGCACTTGCACCAGTGTGTCCCAATGCTTCGCTGAACCCTATGAACTTTGGATCAGTACCATCCTTCTCAGACTCTTTCCCTGTGAAGGAAGGGAATCATCCTTTTGGGCTGTTGAATCCTGCTGCTGGAGATGGAAGGATGAAAAGGAGCTTGTTTCATAGCTCATCATCAGCATTCACTAAGTTTAAGGGTTCTTCTTCCTCGGAGAAAGAGCAAGCACGTGACGGTGGATTCAAAGATGTTCCGTTCTATGATTTTCTTGGTGTCGGAGCTGATGATGAGTGA 756 0.4444 MDNSSPAAENIPNYRVNHWKEDEDEKLSQLVQEHGPQDWNAIAQHIQGRTGKSCRLRWRNHLDPRVNRNPFTKEEEERLIAAREVYGAKWATIAKLFHGRTDNALKNHWHVLIARKRKEANNGSLKGLINVSNSSSSTITPRHETFFGKLNFNAAQRALAPVCPNASLNPMNFGSVPSFSDSFPVKEGNHPFGLLNPAAGDGRMKRSLFHSSSSAFTKFKGSSSSEKEQARDGGFKDVPFYDFLGVGADDE* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00440 251 Gene3D - 69 138 - -
Lapu8g00440 251 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Lapu8g00440 251 SMART sant 67 115 IPR001005 -
Lapu8g00440 251 SMART sant 15 64 IPR001005 -
Lapu8g00440 251 FunFam MYB transcription factor 17 67 - -
Lapu8g00440 251 Pfam Myb-like DNA-binding domain 19 79 - -
Lapu8g00440 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 66 IPR017930 -
Lapu8g00440 251 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu8g00440 251 CDD SANT 19 62 IPR001005 -
Lapu8g00440 251 Gene3D - 17 67 - -
Lapu8g00440 251 MobiDBLite consensus disorder prediction 216 237 - -
Lapu8g00440 251 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Lapu8g00440 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lapu8g00440 251 CDD SANT 70 113 IPR001005 -
Lapu8g00440 251 PANTHER MYB PROTEIN-RELATED 18 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00440 Lapu-Chr8 20620405 20622467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00440 18 128 MYB Transcription Factor Family AT1G17950 60.360 2.06e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu8g00440 Myb_DNA-bind_6 1.6e-20 CL0123