Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00430 ATGGAGTGGTGTATAAGGGAAGCAGTTATGATTTGTCCTAAAATTTGTTGTTTTTACTTTCCTCCTATTTTACTGCAGGAAACTTTTAAAATTGACAATAATGAGCAAAAACGCTCTTCAGAATTAGAGTGTTTGCTTAATCGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTGCATAATGGATTTTCTAGCATGTCAGATGGCCATGGTGCAACTGAAAGGTGTCAGCGTGTGTTCTGTGATATCTTAGCCTCTGAGAAGTTCAGTTTATTATGTAAAATACTACTTGAAAATTTCCAAGAAATGAAGCCTGAAACTGTGTTTGACTTTAGCGTGATAAACTCAAGGATGAAAGAGCAAGCGTATGAACAATCACCTGCACTTTTCTTGTCTGATCTTCAACAGGTTTGGCAAAAGCTTCAAAATACTGGCCATCAGATTGTTGCTATAGCCCGGAGCCTCTCCAACTTGTCAAAAGCTTCCTTCTGTGAGCGGGTGGGGATTTCTGTGCACAGATCCTTTGAGGACGAAAAGCAAGTGGAATCAATTTCTCACATGAAACCAGAGCAGACAGTAGAATGTGTTACATTCAAAATTGGAAGTTGCAGGCACTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAAATGTATCATCTGTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCGCAAAAGCTGGTTCTGTCCCAATTGTACTGCCAGTGGAATTGGATGTCAACATGAGAATTGTGTGGTGTGTGACCGGTTGAATTTCCCGAAGACACTGGACGGCAATGTTGGCGAGGAAAGCATCCCTACAAAAGAGGAAAAACCAAATGAATTTGAAGAGAATTCAAATTGTACTTATGATAGGGTTCCAGTTTCCGAAGAAGAGATATGTATATCTGACTGCAAAATTTGTAAAATGGTGGTGCAAGGTGGAAACGCAAAAGTCTGTGGTCACTTATTTTGCCCCAGTAAATGCTACCATGTAAGGTGTTTGTCAAGTAAGCAGCTTAAGACATATGGTCATTGTTGGTATTGTCCTTCTTGTATATGCCAAGTCTGCTTCACCGACAAAGATGATGATAAGATTGTACTCTGTGATGGCTGTGATCATGCATACCATATCTACTGTATGAAACCTCCGCTAAATTTGATTCCTGTAGGTAAATGGTTCTGCATAAAATGTGATGCCGGGATACTAGCAATACGCCAGGCAAGAAAGGCATACGAGAGCAAGAAAGGGAAAATTGCTCAGAATGATTTAAAGCGAAATGAAGATATTGAGAAGAAATGGAACAGAAAACGGGGACGGGAATCTGACAAAGTTGGAGGAATGGACATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGAACATGAATGCAATCCAGATGGAGTCAGAGAGAACATTAACATAA 1458 0.4019 MEWCIREAVMICPKICCFYFPPILLQETFKIDNNEQKRSSELECLLNRLQSEANGQENAVHNGFSSMSDGHGATERCQRVFCDILASEKFSLLCKILLENFQEMKPETVFDFSVINSRMKEQAYEQSPALFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVGISVHRSFEDEKQVESISHMKPEQTVECVTFKIGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIEPAVKEIPRKSWFCPNCTASGIGCQHENCVVCDRLNFPKTLDGNVGEESIPTKEEKPNEFEENSNCTYDRVPVSEEEICISDCKICKMVVQGGNAKVCGHLFCPSKCYHVRCLSSKQLKTYGHCWYCPSCICQVCFTDKDDDKIVLCDGCDHAYHIYCMKPPLNLIPVGKWFCIKCDAGILAIRQARKAYESKKGKIAQNDLKRNEDIEKKWNRKRGRESDKVGGMDMLITAANTLNSEENMNAIQMESERTLT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00430 485 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Lapu8g00430 485 Gene3D - 84 251 - -
Lapu8g00430 485 SMART PHD_3 203 249 IPR001965 -
Lapu8g00430 485 SMART PHD_3 365 408 IPR001965 -
Lapu8g00430 485 SMART PHD_3 313 362 IPR001965 -
Lapu8g00430 485 Pfam PHD-finger 204 250 IPR019787 -
Lapu8g00430 485 Pfam PHD-finger 362 408 IPR019787 -
Lapu8g00430 485 Coils Coil 39 59 - -
Lapu8g00430 485 SUPERFAMILY FYVE/PHD zinc finger 362 411 IPR011011 -
Lapu8g00430 485 ProSiteProfiles Zinc finger PHD-type profile. 360 410 IPR019787 -
Lapu8g00430 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 409 IPR013083 -
Lapu8g00430 485 ProSiteProfiles Zinc finger PHD-type profile. 201 251 IPR019787 -
Lapu8g00430 485 PANTHER OS02G0192300 PROTEIN 122 265 - -
Lapu8g00430 485 FunFam PHD finger protein EHD3 isoform A 95 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00430 Lapu-Chr8 20315431 20324440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00430 362 435 C2H2 Transcription Factor Family AT3G01460 46.250 4.01e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu8g00430 PHD 1.7e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00430 - - vun:114195482 829.32