LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g00428	ATGTCTGGCACTGCGGGTAAGGTGATCAGGTGCAGAGCTGCGGTGGCATGGGAACCGGAGAAGCCACTGTCGATAGAGACCATAGAAGTGGCACCGCCTGGGAAAGGCGAAGTGCGTTTGAAAATCCTCTTCAACTCCCTTTGCCGAACTGACGTTTACTGGTGGGATGTTAAGGGTCAGAATCCACTGTTTCCTCGTATCTTAGGTCATGAAGCTTCAGGGATTGTGGAGAGTGTGGGCGAGGGTGTGACCGATCTGAAACCAGGAGATCATGCACTTCCAATATTCACTGGGGAGTGTGGGGAATGCAAATATTGCAAGTCAGAAGAGAGCAATCTGTGTGAGGTGCTCAGGATCAACAGTGACAGAGGAGTTATGCTCAGTGATGGAAAAACAAGGTTCTCCAAAAATGGACAACCCATTTACCACTTTCTCGGAACCTCCACATTCAGTGAATACACTGTTCTTCATGCTGGCTGTGTTGCCAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTGTTGTCAGTTGCGGATTTTGCACAGGTTTTGGTGCTACTGTAAATGTTGCAAAACCAAAGCCTAATGACACCGTTGCTGTCTTTGGTTTAGGAGCTGTTGGTCTTTCTGCCTGTGAAGGAGCAAAGTTTTGTGGTGCATCGAGAATCATTGGGGTTGATTTACTCCCCAGTCGATTTGAACAAGCCAAACAATTTGGGGTCACTGAATTTGTGAACCCCAAAGAGCATAACAAACCAGTTCAACAGGTGATTGCTGAAATGACCGATGGAGGAGTAGATCGTGCTATTGAATGCACTGGAAACATCCAAGCTTCGATCTCAGCATTTGAATGCACTCATGATGGTTGGGGTGTTGCTGTACTTGTTAGTGTTCCAAAGAAGGATGTTGAATTCAGAACGCATCCTATGAATTTCATGGAGGGAAGAACTCTGAAGGGTACCTTCTATGGCCACTACAAACCCCGCACTGATATTCCTTCTGTTGTGGAGAAGTACCTCAACAAGGAGCTGGAACTGGACAAATTTATCACTCACACTGTGCCATTCTCAGAGATCAACAAGGCATTTGACCTTATGCTGAGAGGGGAGGGTATAAGGTGTCTCATCCGCATGGAAGAGTAA	1143	0.4681	MSGTAGKVIRCRAAVAWEPEKPLSIETIEVAPPGKGEVRLKILFNSLCRTDVYWWDVKGQNPLFPRILGHEASGIVESVGEGVTDLKPGDHALPIFTGECGECKYCKSEESNLCEVLRINSDRGVMLSDGKTRFSKNGQPIYHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVCVVSCGFCTGFGATVNVAKPKPNDTVAVFGLGAVGLSACEGAKFCGASRIIGVDLLPSRFEQAKQFGVTEFVNPKEHNKPVQQVIAEMTDGGVDRAIECTGNIQASISAFECTHDGWGVAVLVSVPKKDVEFRTHPMNFMEGRTLKGTFYGHYKPRTDIPSVVEKYLNKELELDKFITHTVPFSEINKAFDLMLRGEGIRCLIRMEE*	381

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g00428	380	CDD	alcohol_DH_plants	9	377	-	-
	Lapu8g00428	380	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	69	83	IPR002328	GO:0008270\|GO:0016491
	Lapu8g00428	380	PANTHER	ALCOHOL DEHYDROGENASE	6	376	-	-
	Lapu8g00428	380	Pfam	Zinc-binding dehydrogenase	206	333	IPR013149	-
	Lapu8g00428	380	FunFam	Alcohol dehydrogenase 6	14	196	-	-
	Lapu8g00428	380	SUPERFAMILY	GroES-like	328	377	IPR011032	-
	Lapu8g00428	380	Gene3D	-	183	321	-	-
	Lapu8g00428	380	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	169	342	IPR036291	-
	Lapu8g00428	380	FunFam	Alcohol dehydrogenase class-P	183	321	-	-
	Lapu8g00428	380	Pfam	Alcohol dehydrogenase GroES-like domain	36	163	IPR013154	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g00428	Lapu-Chr8	20253722	20259189	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g00428	1	370	Monolignol Biosynthesis Gene Families	AT1G72680	24.533	1.38e-13	69.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g00428	K18857		-	gmx:100775490	706.442

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