Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00425 ATGAAAATGCTGCCAACTTCCACCGCCGGAGAGGCCAGCCACGGTGGCCGGACGGTGGTCGTGGGAGTGAAGATGGACTCTCACAGCACCGAGTTGCTCACTTGGGCTTTGTTCAAAGTGGCTCAGCCCTGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTTAATCGAGATGGGAAATCCTCTTTGTTTTCGCTTGTCAAAGCTTTTGACTCTATGCTTGCCGTTTACGAAGGGTTCTGCAATTTGAAACAGGTGGATCTTAAGTTCAAAATATGTCGGGGTTCATCAGTGAGGAGAATCCTGGTTCGAGAAGCAAATGCTTATTCTGCAACGCACATCATAGTTGGAAGTCCTAAAGGTCTCCATAGGATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGCTACCAAAGGATTGTTGGGTTCTTGCTGTCAATAATGGGAAAATTGTGTTCAAGAGAGATGGTTCACCCGCAACTCGAGCTGACATGAAAGGAGTTGATCAGAACCAAAAAACTGGAGTGCTTTGTTCGATTCACCGAACACTTGGCAAGAGTTCAAAAGTGCTAGACGATGATGGTACCGGGATGCAGGAAACGGGTAGTGGTCAAATTTCAGATCACAGTTTGGCTAAGGCTTTTCTGGATTCTAAAGAATTCATTGAGAAGAAGAGTTGCTCTATTTGTTCTTCAAACCCAGCACTGTTCGGTTTATGTTGTAACAATTCAGAAGATGAGTCGTGTGGTGATGCTTGTGATGAGAACCCTTTGGCAATAGTGTCTGTGCAGACCAATGATTCTGCTTCTAAACCAGGTTGGCCACTGCTTCATAGGACAATTATATCTGACAGGAAATGTTCTGAAAGATCGCTGTTTCGCCAGATCTCCGTGGTACAATGGGCAATGCAGTTACCTTCTAGAAATCTTTCATATGCTGCACATCTTGACCAAAAACCAAACAATTGTGTCCCAAATAAGGATCAGTTTTTGGCTCTAGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAAACAGGGACTGCCTCTTTGCCTGAACACAACTCAACAAGCATTCCTAAGGAACTGGAGGGCCTTCATGAGAAATACTCATCCAGTTGCAGATTGTTCAAGTACCAAGAACTTGTATTGGCAACAACAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGTGAGGTATATAGAGGCTGGCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCATCTGATGATGTTCTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTACATCACAAAAACATTATTTCCCTCCTTGGCTTCTGCTTTGAGGATGGTAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATCCATGGTAATAAGAAAAATCCACTAGTGTTTGGATGGACTGAGAGATACAAGGTGGCAATGGGTATTGCTGAGGCTTTGGAGTATCTCCATAATAATGAAGGCCAACCTGTGATCCATCGCGATGTAAAATCATCAAATGTTCTGCTATCTGAGGATTTTGAACCTCAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAATCTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCTGAGTACTTCATGTATGGTAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTCCTTTCAGGGAGAAAGCCCATAAGTAGCGATTATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAATCCAATTCTAAATAGTGGGAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCCTGAAGAGATGGAAAGGATGGTCTTGGCAGCTACTCTTTGTATCAGACGTGCTCCAAGATCTAGACCACAAATGAGCCTTATCTCAAAGCTCCTTGGAGGTGATGCTGAAGTGATGAAGTGGGGAAGACTAGAAGTGAATGCTTTGGAAGCAGCAGAAATGGTTGATGATGAAGGTTGTCCACCTTCCAATCTGCAGTCACACCTTAACCTTGCTCTACGTGATGTGGAGGAAGACTCACTCTCCATGTGCAGTGTGGAGCAAAACGTCTCATTGGAGGACTACCTGAGAGGCAGGTGGAGCCGTTCATCAAGCTTTGATTGA 2229 0.4356 MKMLPTSTAGEASHGGRTVVVGVKMDSHSTELLTWALFKVAQPCDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSMLAVYEGFCNLKQVDLKFKICRGSSVRRILVREANAYSATHIIVGSPKGLHRIRPCISVARYCAKKLPKDCWVLAVNNGKIVFKRDGSPATRADMKGVDQNQKTGVLCSIHRTLGKSSKVLDDDGTGMQETGSGQISDHSLAKAFLDSKEFIEKKSCSICSSNPALFGLCCNNSEDESCGDACDENPLAIVSVQTNDSASKPGWPLLHRTIISDRKCSERSLFRQISVVQWAMQLPSRNLSYAAHLDQKPNNCVPNKDQFLALDSKSGALVPVDAETGTASLPEHNSTSIPKELEGLHEKYSSSCRLFKYQELVLATTNFLPENLIGKGGSSEVYRGWLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENIHGNKKNPLVFGWTERYKVAMGIAEALEYLHNNEGQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWANPILNSGKVLQLLDPSLGDNYDPEEMERMVLAATLCIRRAPRSRPQMSLISKLLGGDAEVMKWGRLEVNALEAAEMVDDEGCPPSNLQSHLNLALRDVEEDSLSMCSVEQNVSLEDYLRGRWSRSSSFD* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00425 742 Gene3D Phosphorylase Kinase; domain 1 361 470 - -
Lapu8g00425 742 Pfam Protein kinase domain 400 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00425 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Lapu8g00425 742 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Lapu8g00425 742 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 365 470 - -
Lapu8g00425 742 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 16 153 - -
Lapu8g00425 742 FunFam Putative receptor-like serine/threonine-protein kinase 471 683 - -
Lapu8g00425 742 PANTHER OS08G0249100 PROTEIN 234 673 IPR046958 -
Lapu8g00425 742 Gene3D Transferase(Phosphotransferase) domain 1 471 675 - -
Lapu8g00425 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Lapu8g00425 742 Gene3D HUPs 16 153 IPR014729 -
Lapu8g00425 742 ProSiteProfiles Protein kinase domain profile. 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00425 742 Pfam Universal stress protein family 17 149 IPR006016 -
Lapu8g00425 742 CDD USP_Like 18 149 - -
Lapu8g00425 742 CDD STKc_IRAK 402 661 - -
Lapu8g00425 742 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00425 742 SUPERFAMILY Protein kinase-like (PK-like) 377 665 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00425 Lapu-Chr8 20158316 20162358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00425 383 663 Trihelix Transcription Factor Family AT1G68690 46.154 6.18e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lapu8g00425 Pkinase 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00425 - - gmx:100305405 1100.89