Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00420 ATGGCAAGTGTGTTGCTCCTTCAACGTGATTCTGTACTGATGACGCTATTGGTGTTGGTGTTGCTAATGGTTGTGGTTATCAGAACTGGCAGCGCTCATAACGAGTGCCATAAGGAATTGCCTTGCGGGCGGGACCAACCGCTTATTAGATTTCCCTTCCAACTCATCAAGGGGATGGACCAGGGATGCACTTATCCCCGTCTTTGTCTTTCTTGTACCGAAAGTAATGAGACCATGCTTGTGCTTCCTACTTTGAAACTCCAAGTCATAGACATAGACTACCGAAGTCAGGAAATTGTGTTAACTGACCCGGAAAACTGCTTTTCGAACAAGTTTCAGCAAATCATAGATTTTGTTCAAAGTTACCAATTTGAATTACCATTTGCTGAACCACGCAATAACTTGAGCTTCTTCAACTGTACTTCAGCTGGGCATCCATACCTCAGAAACTTCCCCGGGAAACAACATACGGTCTCCTGTCCGATTTTCATTTCTAGTTCTTTGGAAAGTGTCCTCGAATTGGACCTAACATCCTGTACCAAGATGTTCGACATCACTGCGCCAATCGATCCCATCTACGGGGGTTCCTTGCATTTGAGATGGTCCAAACCAAATTGTGATGAGTGCAAAGCAAAAGGCAAGAGATGTAAATGGAAGACCAACAACAGCACAGAAGGAGACATCGAATGTTTTGAATGCAAAGGGAGAAAAGCTCACGTTCATAAATCTTTTATTTTTGCTATTACAGGTTCGATCTTTTTGGGGCTGGTGGTCATTGCTGTCTTTAAGATCACGCTCTATTTTAGGAAGAAGGAAGAAGACCAAGCAAGAGTGGACAAATTCTTACAGGACTACAGGGAAGACAAGCCTGCAAGATTCACCTACGCTGATCTGAAAAGAATCACTAATGGCTTTAAGGAAAAGTTAGGAGAAGGAGCTCATGGGGCAGTGTTCAGAGGAAAACTTTCGAGTGAGATCCCAGTGGCTGTGAAGATCCTATACAATACAGAGGGAGAAGGGAATGAGTTCATCAACGAAGTTGGAATTATGGGAAAAATTCATCACATCAACGTGGTGCGTTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTGTCTACAATTTCTTTCCAAACGGTTCCTTACAAAGCTTCATATTTCCACCAGAAGACAAGGACCATTTCCTTGGCTGGGAGAAGCTTCAACACATTGCGCTTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGCAATCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGATTACAGCTTCACTCCGAAAATTTCAGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCCAGTGTGGTGTCCATGACAGCTGCAAGGGGAACCTTGGGATACATTGCACCTGAAGTCTTCTCCAGAAACTTTGGGAACGTCTCTTACAAGTCTGATATTTACAGTTATGGAATGCTGTTGTTAGAAATGGTTGGTGGGAGGAAGAATGTGGACATGTCTTCTGCACAAAATTTCCATGTTCTCTACCCGGATTGGATCCATAACCTGGTTGATGGAGATGTACATATCCATGTTGAGGATGAAGGTGATGTTAAGATTGCAAAGAAACTAGCAATTATTGGACTTTGGTGCATCCAGTGGCAGCCAGTGAACCGTCCATCCATAAAATCTGTGATACACATGCTGGAAACTGAAGAGGAAAACCAGTTACTTGTGCCTCCTAATCCATTTCACTCGACCACTTCCACTACAGCCAAGGGACTCACTTCGACAAGACGACCTTTAGAGTTGGAAGTGATTGAAGAATGA 1839 0.4334 MASVLLLQRDSVLMTLLVLVLLMVVVIRTGSAHNECHKELPCGRDQPLIRFPFQLIKGMDQGCTYPRLCLSCTESNETMLVLPTLKLQVIDIDYRSQEIVLTDPENCFSNKFQQIIDFVQSYQFELPFAEPRNNLSFFNCTSAGHPYLRNFPGKQHTVSCPIFISSSLESVLELDLTSCTKMFDITAPIDPIYGGSLHLRWSKPNCDECKAKGKRCKWKTNNSTEGDIECFECKGRKAHVHKSFIFAITGSIFLGLVVIAVFKITLYFRKKEEDQARVDKFLQDYREDKPARFTYADLKRITNGFKEKLGEGAHGAVFRGKLSSEIPVAVKILYNTEGEGNEFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNFFPNGSLQSFIFPPEDKDHFLGWEKLQHIALGIAKGIEYLHQGCNHPIIHFDINPHNVLLDYSFTPKISDFGLAKLCSKNPSVVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSAQNFHVLYPDWIHNLVDGDVHIHVEDEGDVKIAKKLAIIGLWCIQWQPVNRPSIKSVIHMLETEEENQLLVPPNPFHSTTSTTAKGLTSTRRPLELEVIEE* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00420 612 FunFam PR5-like receptor kinase 378 583 - -
Lapu8g00420 612 Gene3D Phosphorylase Kinase; domain 1 276 377 - -
Lapu8g00420 612 Pfam Protein tyrosine and serine/threonine kinase 305 572 IPR001245 GO:0004672|GO:0006468
Lapu8g00420 612 SUPERFAMILY Protein kinase-like (PK-like) 285 573 IPR011009 -
Lapu8g00420 612 FunFam S-receptor-like serine/threonine-protein kinase 270 377 - -
Lapu8g00420 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 275 590 IPR045874 GO:0004672
Lapu8g00420 612 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Lapu8g00420 612 Pfam Wall-associated receptor kinase galacturonan-binding 36 103 IPR025287 GO:0030247
Lapu8g00420 612 Gene3D Transferase(Phosphotransferase) domain 1 378 582 - -
Lapu8g00420 612 ProSiteProfiles Protein kinase domain profile. 303 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00420 Lapu-Chr8 20063408 20065755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00420 1 586 Receptor kinase-like Gene Family AT5G38260 33.807 6.61e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00420 PK_Tyr_Ser-Thr 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00420 - - gmx:102662104 909.442