Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00414 ATGTCGAGGATTTGCGTGAAGAATCTTCCGAAACATGTTGCGGAGGATGAACTACGGGAGTTCTTTTCTGAGAAAGGAATAATCACTGATGTCAAGCTCATGCGTACCAAAGATGGTGAGAGTCGGCAATTTGCATTTATAGGATATCGAACTGAAAAAGAAGCTCATGAAGCCATTCGATATTTCAATAATTCCTTCCTTCGTACATCTAAAATTATTTGTGAGGTTGCTCGAAAACTTGGGGATGAAAATCTTCCTCGTCCGTGGGGTCGCCATTCCAAGAAGAAAGATGACAAAGGGACTGTCCCGGATGTGGGAAAACCTGCTAGAGCTAAGGGACGCCAAGAAAAATTGAAGGACGGTGTGGATGTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACTTCCGGTTTGACCAGTGTTGGCAACAGCCAAGCAGTATCAAATGAGGATAATGAAGGTTCATCAGTTTCAACTGATGAAAGTGGCTCATTAGAAGATGGACTTCTGGATATTTCTGAACCCAGTAGCAAGTCACGTGAACCTAAACGTGACGAGGTAATTTCAGATATGGATTATTTCAAGAGTAGGGTGACAAAAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGACGATGACAATAGTGATCATAATGATGCCTCATCTGTTGACAAAGATGTTAATAGTAGCATTAAAGAAGAAGAAAATTGTGATCCAAGAAATGATGCTCGAGAGGTAGACCTAGAGGGCAAAGAAGATACTAGTGGAGAGGATGTTACCCGTGAAAAGTCTCGAGTAAATGGCCAATTATCAAAAACAGAAGACGAGAAAGGAGATTTTGAGACCTGTCGGTTGTTTGTTCGGAATCTGCCATACACAACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATACAGCTCCAGAATTTGCAGCCAGGGCTCTGAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTAATGCCAGCCTTACAAAGACACTCAGAGAATCAAGGGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAAAAGCAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATATGGTGTTGATAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAGACTCAAGTGATTTCAGAAACAAAACAGGCTTTTAAAAATGCTGGTGTAAATGTGGAGGTCTTGGAGGAACTTGCTAATAATAAAATAGATGGCCTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCGTATGGTTCCACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAACAGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCGACATCAAAAAATAATGACATGAATGGTGCAATTGGTGAAAACGATGCCAAGAGGCAGATATTGGAGCAACATGTGGAAAGAATAACAGATGTGGATATTGATCCAGACAGAGTAGAGGCTCGGTCCCTATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAAAATCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAACGGAAAAAATGTTTCTATGGGGTTTGGATTTGCTGAGTTTGACTCTCCTGAAACTGCTACAAATGTTTGCAGAGACTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAGCCTTGTCATGTCAAGAATGATGGGCAAAAACTAAAGACAATTGAGAAGGATAAGAGTTCAACAAAATTGCTTGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTCAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCACCTCTATGGGAGACATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTGCTCAATTTAGTGATGATCACAATGGATTTCAAGGTGCTATGAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTGGATGAAGGGAAGATGAAGTTTGGAAGATTTGCTGACTAG 2517 0.4076 MSRICVKNLPKHVAEDELREFFSEKGIITDVKLMRTKDGESRQFAFIGYRTEKEAHEAIRYFNNSFLRTSKIICEVARKLGDENLPRPWGRHSKKKDDKGTVPDVGKPARAKGRQEKLKDGVDVDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVGNSQAVSNEDNEGSSVSTDESGSLEDGLLDISEPSSKSREPKRDEVISDMDYFKSRVTKEWSDSESSDEDDDNSDHNDASSVDKDVNSSIKEEENCDPRNDAREVDLEGKEDTSGEDVTREKSRVNGQLSKTEDEKGDFETCRLFVRNLPYTTTEEELEEHFSHIGSVSQVHLVVDKDTKRSKGIAYILYTAPEFAARALKELDNSIFQGRLLHVMPALQRHSENQGNNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKYGVDKSDLLDREADDLAVRIALGETQVISETKQAFKNAGVNVEVLEELANNKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPTEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNNDMNGAIGENDAKRQILEQHVERITDVDIDPDRVEARSLFVKNLNFKTTDENLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFAEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKLKTIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDDHNGFQGAMKLSKKRKDVDILDEGKMKFGRFAD* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00414 838 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 714 781 IPR000504 GO:0003723
Lapu8g00414 838 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 494 555 IPR000504 GO:0003723
Lapu8g00414 838 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Lapu8g00414 838 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 369 IPR000504 GO:0003723
Lapu8g00414 838 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 614 688 IPR000504 GO:0003723
Lapu8g00414 838 Gene3D - 609 701 IPR012677 -
Lapu8g00414 838 MobiDBLite consensus disorder prediction 146 177 - -
Lapu8g00414 838 MobiDBLite consensus disorder prediction 378 408 - -
Lapu8g00414 838 CDD RRM4_RBM19_RRM3_MRD1 492 563 - -
Lapu8g00414 838 Gene3D - 164 385 IPR012677 -
Lapu8g00414 838 FunFam Nucleotide/nucleic acid binding protein 608 703 - -
Lapu8g00414 838 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Lapu8g00414 838 SUPERFAMILY RNA-binding domain, RBD 707 798 IPR035979 GO:0003676
Lapu8g00414 838 SUPERFAMILY RNA-binding domain, RBD 489 580 IPR035979 GO:0003676
Lapu8g00414 838 SUPERFAMILY RNA-binding domain, RBD 600 698 IPR035979 GO:0003676
Lapu8g00414 838 MobiDBLite consensus disorder prediction 84 125 - -
Lapu8g00414 838 FunFam Multiple RNA-binding domain-containing protein 1 483 585 - -
Lapu8g00414 838 CDD RRM6_RBM19_RRM5_MRD1 712 786 - -
Lapu8g00414 838 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Lapu8g00414 838 MobiDBLite consensus disorder prediction 391 408 - -
Lapu8g00414 838 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 712 788 IPR000504 GO:0003723
Lapu8g00414 838 MobiDBLite consensus disorder prediction 146 288 - -
Lapu8g00414 838 CDD RRM5_RBM19_like 613 691 IPR034423 -
Lapu8g00414 838 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 612 709 IPR000504 GO:0003723
Lapu8g00414 838 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 492 564 IPR000504 GO:0003723
Lapu8g00414 838 Coils Coil 387 407 - -
Lapu8g00414 838 CDD RRM1_MRD1 2 77 - -
Lapu8g00414 838 Gene3D - 486 588 IPR012677 -
Lapu8g00414 838 Gene3D - 702 809 IPR012677 -
Lapu8g00414 838 SUPERFAMILY RNA-binding domain, RBD 290 381 IPR035979 GO:0003676
Lapu8g00414 838 Gene3D - 1 121 IPR012677 -
Lapu8g00414 838 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 296 398 - -
Lapu8g00414 838 SMART rrm1_1 613 691 IPR000504 GO:0003723
Lapu8g00414 838 SMART rrm1_1 713 784 IPR000504 GO:0003723
Lapu8g00414 838 SMART rrm1_1 298 371 IPR000504 GO:0003723
Lapu8g00414 838 SMART rrm1_1 3 75 IPR000504 GO:0003723
Lapu8g00414 838 SMART rrm1_1 493 560 IPR000504 GO:0003723
Lapu8g00414 838 SMART rrm2_1 298 371 IPR003954 GO:0003676
Lapu8g00414 838 SMART rrm2_1 713 784 IPR003954 GO:0003676
Lapu8g00414 838 MobiDBLite consensus disorder prediction 232 288 - -
Lapu8g00414 838 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Lapu8g00414 838 FunFam Multiple RNA-binding domain-containing protein 1 706 812 - -
Lapu8g00414 838 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00414 Lapu-Chr8 19872717 19889407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00414 605 804 Eukaryotic Initiation Factors Gene Family AT1G49760 28.638 1.41e-12 69.3