Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00413 ATGAGAAACCCTTCATCAACGTCAACAACTAAGAACAAAAAGAGTGGTAGTAACACTACTACTTCCAGCTACAGCAACAACAACAACAACATTGGTAGCAGCAGCAATAACAATAGTACCAACACCAACACTCCATGCTGCAGCAAGGTTGGGTTGAAGAGAGGACCATGGACACCAGAAGAAGATGAGGTGTTAGCCAATTACATCAAGAAAGAAGGAGAAGGGCGTTGGAGAACGCTCCCCAAGCGTGCTGGCCTTCTCCGGTGCGGCAAAAGCTGCCGTCTTCGGTGGATGAACTACCTCCGCCCCTCCGTGAAACGCGGACACATCGCCCCTGACGAGGAAGATCTCATCCTCCGTCTCCACCGCCTCCTTGGCAACCGGTGGTCTTTGATTGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAATACTCATCTAAGTAAAAAGCTCATTAGCCAAGGGATTGATCCCAGAACTCACAAGCCTCTCAACCCACCATCCATTAATATTCCTTCTTCTACAACAACTACTTTCAATATTCCTCCACCCTCTATCCCTCCTCCAACGATCATCTCCAGCCACAATCCTTGTCATGATCTCACTATTGTTAACCAAGGAATTCATGCCATTCATCATTTGGGTCAACATCACCAACCTCCGGTTTCAAACCCCTATGAAAACAACATTAACAATCAAGTGCCTGCTGTCACAGATGATGTTTCTGCAATGGGGTTCATGGACAATGAGGATTGCAACGATGATATCAACATCAATTATTACTCAGACGATGTAATTTCTTCCTTCCTCAATTCCTGGATCAACGAAGATGCTTTTGCGGCGCAGCAGCACCACATGCAAACAGAGCTCCCTAGTGAGCGCTGCATTCCACTGCCATGCGATGATCGCGTGGATGATCCTCTGATTTCAATTACCGCTGCTTCTACATCGCAGGGTTATGATGATGACCTTGGGGTTCTGTGGGAATCGTCTCTCGTGCCTTCTACTACTTTCGGCCATCACGTGAACGACCCCATCACCAAGATGGCTCATGATATCCATCACCACAATCAATAG 1092 0.4689 MRNPSSTSTTKNKKSGSNTTTSSYSNNNNNIGSSSNNNSTNTNTPCCSKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSINIPSSTTTTFNIPPPSIPPPTIISSHNPCHDLTIVNQGIHAIHHLGQHHQPPVSNPYENNINNQVPAVTDDVSAMGFMDNEDCNDDININYYSDDVISSFLNSWINEDAFAAQQHHMQTELPSERCIPLPCDDRVDDPLISITAASTSQGYDDDLGVLWESSLVPSTTFGHHVNDPITKMAHDIHHHNQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00413 363 CDD SANT 56 101 IPR001005 -
Lapu8g00413 363 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 44 178 - -
Lapu8g00413 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 156 IPR017930 -
Lapu8g00413 363 FunFam Myb transcription factor 51 107 - -
Lapu8g00413 363 ProSiteProfiles Myb-like domain profile. 49 101 IPR001005 -
Lapu8g00413 363 Gene3D - 111 172 - -
Lapu8g00413 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 101 IPR017930 -
Lapu8g00413 363 SUPERFAMILY Homeodomain-like 51 148 IPR009057 -
Lapu8g00413 363 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Lapu8g00413 363 Pfam Myb-like DNA-binding domain 112 152 IPR001005 -
Lapu8g00413 363 MobiDBLite consensus disorder prediction 1 43 - -
Lapu8g00413 363 Gene3D - 51 107 - -
Lapu8g00413 363 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Lapu8g00413 363 SMART sant 106 154 IPR001005 -
Lapu8g00413 363 SMART sant 53 103 IPR001005 -
Lapu8g00413 363 CDD SANT 112 152 IPR001005 -
Lapu8g00413 363 FunFam transcription repressor MYB5-like 111 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00413 Lapu-Chr8 19850995 19852899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00413 40 322 MYB Transcription Factor Family AT3G13540 51.943 4.20e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu8g00413 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00413 K09422 - gmx:100797847 460.299