Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00412 ATGGATAAGCAAGTGATGATGCTCCTTTCTGTCCTAATTTTCCTCTTCACTGTTTACCTAGCTGGTGCTGCATCTACCACATGCCCCATGGATCTCAGCTATGTTGAGACCTTTCCATGGGATACTTCGTCCTGCAGAGACCCTGTTGATAAGGAGCACTGTTGCCAAGCTTTGCTCAGTGTAATTGGCATAGGGCTATCCCAACACCTCAAAGACACTTCCTTGTTTCAACTTCCTGATGAAAACACTTCCTCCATTTGCTTGTCCGATTTCCAAACCAAACTCTCAGCCTTGTCAATTAACTCATCTTTGGTCCCCTCTTGTTTTCCCAGCGCTTCCCAGCTTGTTACCAACACTTCCACTTGTGCAGGTATTATAACTGTCGACGATTGGAAGCAAAAAGTGGGTATGATTAGCCCCTTAGACACTTCTTGCAATGGGGACCTCAGTGATCAAACTCGTTGCAGCATATGCTCTGATGCTGGTCTCAAAGTGACTTCCCTACTCAACCGTTTGGACCCAAATGCCACAAAGTGCTTTTACTTCACAGTTTTGTATGCCACGGCTATTGTTAACCAGTTTGGTCCAACAAATTTGGGCACGGCTGCTTGCATACTAGGCATGCCGCTGTCTGTAAAAGATTCATCGAATAAAAAACAAGTGCTGAAACTTGTTTTTGGGTTGGTGGGTGCTGTTGTTGGTGTTGTGCTTGGTTTTGTGTTGATTGTGATATACAGGAAGTGGGACAAGAGAAGGAAGGAAGATATGTATCACAGGTCGGTTGAAAATGGTGTCAGGAACAGTGTTTTGCCTAATACTGGTGCCAAATGGTTTCACATATCGGAGCTTGAGCGAGCCACTAGCAAATTTTCTCAGAAGAATATGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTCTCAGATGGCACTGTGGTTGCAGTCAAGGAAATTTTTGATTTGGAGACGAAAGGGGATGAAGATTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGAACTCTTCTTGCTCTCCGGGGTTGTTGCATTTCAAGTGATAATTTGAAAGGTAAGAGGAGGTTTCTGGTTTATGATTTCATGCCTAACGGCAGCCTCAGTTACCAATTGTCACTTGGTGGGGCTAATAGGCTAACATGGCCACAAAGAAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTACATTATGAGATCAAACCCCCAATTTATCACCGTGACATAAAGACTACCAACATACTTTTGGACTCCAAAATGAAAGCAAAAGTGTCAGATTTTGGGTTGGCGAAGCAAGGAAATGATGGGCAGTCTCATCTCACCACAAGGGTTGCTGGCACATACGGTTATTTGGCACCAGAGTATGCTCTTTACGGGCAACTAACAGAGAAGAGTGATGTGTACAGTTTTGGCATTGTGATTCTTGAGATGATGAGTGGAAGAAAAGTGCTCGATACCATGAATTCATCAGTTGTTTTAATCACGGATTGGGCATGGACACTTGCAAAATCAGGGAACATGGAGGATATTTTTGAGCAGTCAATAAGAGAAGAGGGGCCAGAGAAGATCATGGAAAGGTTTGTTCTTGTGGGAATACTCTGTGCTCATGCAATGGTGGCACTAAGGCCTACTATTGCAGAGGCCCTTAAGATGTTAGAGGGTGACATTGACATACCCCAGTTACCTGACAGGCCAGTGCCACTGGGTCATGAGACCTTCCAATCTTCTTTGTTGCATAGCATGCAAAGAAGTGGAAGATCATCCTCATATTTTACATCATATCTTTCATCTTATTCAACAACTACCACAACAACATAG 1851 0.4371 MDKQVMMLLSVLIFLFTVYLAGAASTTCPMDLSYVETFPWDTSSCRDPVDKEHCCQALLSVIGIGLSQHLKDTSLFQLPDENTSSICLSDFQTKLSALSINSSLVPSCFPSASQLVTNTSTCAGIITVDDWKQKVGMISPLDTSCNGDLSDQTRCSICSDAGLKVTSLLNRLDPNATKCFYFTVLYATAIVNQFGPTNLGTAACILGMPLSVKDSSNKKQVLKLVFGLVGAVVGVVLGFVLIVIYRKWDKRRKEDMYHRSVENGVRNSVLPNTGAKWFHISELERATSKFSQKNMVGQGGDGVVYKGTLSDGTVVAVKEIFDLETKGDEDFCYEVEIISKIKHRTLLALRGCCISSDNLKGKRRFLVYDFMPNGSLSYQLSLGGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKTTNILLDSKMKAKVSDFGLAKQGNDGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEMMSGRKVLDTMNSSVVLITDWAWTLAKSGNMEDIFEQSIREEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPQLPDRPVPLGHETFQSSLLHSMQRSGRSSSYFTSYLSSYSTTTTTT* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00412 616 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 371 571 - -
Lapu8g00412 616 CDD STKc_IRAK 296 565 - -
Lapu8g00412 616 Pfam Protein kinase domain 291 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00412 616 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 77 611 - -
Lapu8g00412 616 Gene3D Transferase(Phosphotransferase) domain 1 371 569 - -
Lapu8g00412 616 SUPERFAMILY Protein kinase-like (PK-like) 275 583 IPR011009 -
Lapu8g00412 616 SMART serkin_6 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00412 616 Gene3D Phosphorylase Kinase; domain 1 251 370 - -
Lapu8g00412 616 ProSiteProfiles Protein kinase domain profile. 290 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00412 616 Pfam SPARK 24 179 IPR043891 -
Lapu8g00412 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Lapu8g00412 616 FunFam Receptor-like serine/threonine-protein kinase At4g25390 255 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00412 Lapu-Chr8 19836649 19838740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00412 20 585 Receptor kinase-like Gene Family AT1G11050 52.560 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lapu8g00412 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00412 - - gmx:100820563 1020.38