Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00410 ATGATCCTTCCGCTCATGTTGTTCTTGACCATTCTCATCGCTGCTGCTGCTGCATCTTCTTCATGCCCCATGGATCTCACCTATGTTCAGACCATTCCCTGGAACACTTCAATCTGCAAAGACCCCATTAATAATCATTCCTGCTGCCAAGAACTCTCCGGCATCTTCGGCATAGGCCTTGCTGAACGTCTCAAAGAAACATCCATATTTTTCCTTCCTGATGTAAACACTTCCTCCACTTGCTTATCTGATTTCAAACACCACCTTTCAGCCATGTCAATAAAACCAAGCATAGTTCCTCTTTGCTTCCCTGACTCAACCCAGTTTGTCACCAACTCTTCAGCTTGTGCAGGGATTAGAACTCTACAAGATTGGAACCAAAAGGTGGGCGTGGATAGCCCAGTGAGTGCATCATGCAAAGGGGACCTAAAAGACCAATCTCTCTGCAGTATTTGCTCAGACGCTGCTCTGGAATTGATATCCAATCTGACGCGTATTTACCCAAATGCTAATGCCACTAAATGTTTTTACCACACGGTGTTATATGCTGCAGCTGTTGCTAATCCGTTTGGTACAACAGATCTAAGTACTACTGGATGCGTACTTGGCCTACAACAACCATCTAATGCAGTAACAAGAGGGTCATCAAATAAAAGGGGAAAAGTGATCAAGCTTGTTATTACGGTGTTGGGTGTTGTTATTGGCGTTGTCCTTGCTTTTGCTCTGATGGTCGTATACGGGAAGTGGGATAAGAGGACAAAGGAAAATATTCATCACAGGGAAGTTGAAAACGAGGTTAGGGCCTGTGTTTTGCCTTGCACAGGTGCTAAATGGTTGCAGATATCAGAGCTTGAACGGGCAACGAGTAAATTTTCAGAGAGGAATGTGATTGGGAAAGGTGGTGATGGGATTGTGTACAAAGGGACTCTTTCAGATGGCACTGTGGTTGCCATTAAGGAAATTTTTGATTTGGAAATTAAAGGGGATGAAGAGTTCTGCAATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAACCTTCTTGCTCTTCGGGGTTGTTGTGTTACAAGTGATAATTTGGAAGGTAAGAGGAGGTTTTTGGTTTATGACTTTATGCCTAATGGAAGTCTCAGTGACCAATTGTGTTCTGATGGCCCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCAAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAGGCTACAAACATACTTTTGGACTCCAAAATGAACGCTATATTGGCAGATTTTGGGTTGGCCAAGCAGGGTAATGATGGGCAGTCTCATCTCACCACAGGGGTTGTCGGCACATATGGTTATGTGGCACCAGAGTATGCGCTATATGGGCAGATAAGTGAGAAAAGTGATGTGTACAGTTTCGGTATTGTGATTCTAGAAATCATGACTGGAAGAAAAGTGCTTGATACTTTGAATACATCCACGGATTCAGTTACAGATTGGGTATGGACACTTGCAGAATCTGGAAAGATGAAGGAAATTTTCGGGGAATCAATACGAGAAGGGCCAGTAAAAATTATGGAAAGGTTTGTTCATGTTGGAATGCTATGTGCTCATTTGGTAGTGGCGTTAAGACCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGGTGACATTGACATTCCCGAATTACCAGACAGACCACTGCCACTAGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAGAGAAGTAGTTGA 1791 0.4305 MILPLMLFLTILIAAAAASSSCPMDLTYVQTIPWNTSICKDPINNHSCCQELSGIFGIGLAERLKETSIFFLPDVNTSSTCLSDFKHHLSAMSIKPSIVPLCFPDSTQFVTNSSACAGIRTLQDWNQKVGVDSPVSASCKGDLKDQSLCSICSDAALELISNLTRIYPNANATKCFYHTVLYAAAVANPFGTTDLSTTGCVLGLQQPSNAVTRGSSNKRGKVIKLVITVLGVVIGVVLAFALMVVYGKWDKRTKENIHHREVENEVRACVLPCTGAKWLQISELERATSKFSERNVIGKGGDGIVYKGTLSDGTVVAIKEIFDLEIKGDEEFCNEVEIISKIKHRNLLALRGCCVTSDNLEGKRRFLVYDFMPNGSLSDQLCSDGPNRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMNAILADFGLAKQGNDGQSHLTTGVVGTYGYVAPEYALYGQISEKSDVYSFGIVILEIMTGRKVLDTLNTSTDSVTDWVWTLAESGKMKEIFGESIREGPVKIMERFVHVGMLCAHLVVALRPTIVEALKMLEGDIDIPELPDRPLPLGHASFQSSLLHGLQRSS* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00410 596 SMART serkin_6 291 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00410 596 CDD STKc_IRAK 297 565 - -
Lapu8g00410 596 SUPERFAMILY Protein kinase-like (PK-like) 274 564 IPR011009 -
Lapu8g00410 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Lapu8g00410 596 FunFam Receptor-like serine/threonine-protein kinase At4g25390 256 371 - -
Lapu8g00410 596 Pfam SPARK 18 176 IPR043891 -
Lapu8g00410 596 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 372 571 - -
Lapu8g00410 596 ProSiteProfiles Protein kinase domain profile. 291 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00410 596 Gene3D Phosphorylase Kinase; domain 1 251 371 - -
Lapu8g00410 596 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 134 577 - -
Lapu8g00410 596 Pfam Protein kinase domain 292 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00410 596 Gene3D Transferase(Phosphotransferase) domain 1 372 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00410 Lapu-Chr8 19807670 19809721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00410 15 593 Receptor kinase-like Gene Family AT1G11050 47.862 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lapu8g00410 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00410 - - vra:106763645 893.649