Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00409 ATGGATAAGCAAGTGATGCTGTTCCTTCCTCATTTTCTCTCCCTCTTCACCATGTTCACACATGGTGCTGCATCTTCCACATGTCCCATGGATCTCTCCTACGTTGGTTCCATTCCCTGGAACACTTCAATCTGCAAAGACCCTATTGACAAGGACCAGTGTTGCAATACACTGAGGAGTGTCTTTGCCATTGGCCTTGCTGAGCTCCTCAAAGATACTTACAAATTTTACCTTCCCGATGCAAACACTTCCTCCACTTGCTTACATGACTTCGCACTCAGGCTTTCAGCCTTGTCCATCCACCAAAACATGGTCCCTCTTTGCTTCCCCAACCCAACACGCTTTGTTTTCAACGCTTCGGCTTGTGCAGGTATCAGAACCACGCAAGATTGGAGGCTCAAGGTGGGCCAGGATACCCCTTTGGATTCAACTTGCAATGGGGACCTCAAAGACAAAACTCGCTGCAAAGTTTGCTCTGAGGCTGCCTCCACACTCACTTCCAAGCTCAAAACTATTGACCCATATGCTGACGCCACAAAGTGCTTTTACTACATTGTGTTGTATGCTGCAGCTCTTGTTAACCCGTTTGGTACAACCGATGTAAGCACCACGTGTTGCATATTGGGCCTGGAGCATAGTGTGGTGGCACAAGGGTCAAGTCATAGAGAAGAAGTGTGGAAGCTTGGTTTTACGTTTTTGGCCGTTGTTATTGGTGTTGTGCTTGCTTTTGTGATGATAGTTGTGTACATGAAGTGGAATAAGAGAAGGAGGGAGAGTGTGTATCACAGGGAGATTGAGAACAAGGTGAAGGCGTGTGTTTTGCCTAATGCTGGTGCTAAATGGTTTCACGTAGCGGAGCTTGAGCGTGCCACTGAGAGATTTTCGCGGACGAATGTGGTTGGTCAAGGTGGTGATGGAGTTGTGTATAAAGGTACTCTTTCTGATGGTTCTGTGGTTGCTGTTAAGGAGATTTTTTATTTGGAGGGTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGATATCATAAGCAAAATAAAGCACAGGAACCTTCTTGCTCTTCGGGGTTGTTGCGTTACAAGTGATAATTTGGAAGGTAAGAGGAGGTTTTTGGTTTATGATTTTATGCCTAATGGAAGTCTCAGTGACCAATTGTGTTCTGTGGGTGCTAATAGGCTAACATGGTCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATCATGAAATCAAACCCCCAATTTATCATCGTGACATAAAGGCAACAAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCAAGCAAGGTAGTGAGGATCAGTCTCATCTCACCACAAGGGTGGCTGGAACATACGGTTATGTAGCACCAGAGTATGCTCTATATGGGCAACTAACTGAGAAAAGTGATGTCTATAGTTTCGGTATTGTTATTCTTGAAATCATGAGTGGAAGGAAAGTGCTTGATGCTTTGAATTCATCTGCTGGTTCAATTACTGATTGGGTATGGACAATGACAGAATCTGGAAAGATGGAGGAAGTTTTTGATGAGTCAATAAGAGAAGGGCCAGTAAAAATTATGGAAAGGTTTGTTCGTGTTGGAATGCTATGTGCTCATGTGGCAGTGGCGTTAAGGCCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGATGGCACTGACGTTCCCCAATTACCTGACAGGCCAATGCCACTGGGTCATGAGTCCTTCCAATCTTCTCTGTTGCATGGTTTACACAGAAGTGGTTGA 1800 0.4456 MDKQVMLFLPHFLSLFTMFTHGAASSTCPMDLSYVGSIPWNTSICKDPIDKDQCCNTLRSVFAIGLAELLKDTYKFYLPDANTSSTCLHDFALRLSALSIHQNMVPLCFPNPTRFVFNASACAGIRTTQDWRLKVGQDTPLDSTCNGDLKDKTRCKVCSEAASTLTSKLKTIDPYADATKCFYYIVLYAAALVNPFGTTDVSTTCCILGLEHSVVAQGSSHREEVWKLGFTFLAVVIGVVLAFVMIVVYMKWNKRRRESVYHREIENKVKACVLPNAGAKWFHVAELERATERFSRTNVVGQGGDGVVYKGTLSDGSVVAVKEIFYLEGKGDEEFCYEVDIISKIKHRNLLALRGCCVTSDNLEGKRRFLVYDFMPNGSLSDQLCSVGANRLTWSQRKNIILDVAKGLAYLHHEIKPPIYHRDIKATNILLDSKMNAKLADFGLAKQGSEDQSHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDALNSSAGSITDWVWTMTESGKMEEVFDESIREGPVKIMERFVRVGMLCAHVAVALRPTIVEALKMLEDGTDVPQLPDRPMPLGHESFQSSLLHGLHRSG* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00409 599 SMART serkin_6 294 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00409 599 CDD STKc_IRAK 309 567 - -
Lapu8g00409 599 SUPERFAMILY Protein kinase-like (PK-like) 277 566 IPR011009 -
Lapu8g00409 599 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 375 574 - -
Lapu8g00409 599 Pfam SPARK 24 181 IPR043891 -
Lapu8g00409 599 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 172 580 - -
Lapu8g00409 599 Pfam Protein kinase domain 296 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00409 599 ProSiteProfiles Protein kinase domain profile. 294 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00409 599 FunFam Receptor-like serine/threonine-protein kinase At4g25390 259 374 - -
Lapu8g00409 599 Gene3D Phosphorylase Kinase; domain 1 254 374 - -
Lapu8g00409 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Lapu8g00409 599 Gene3D Transferase(Phosphotransferase) domain 1 375 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00409 Lapu-Chr8 19797709 19801444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00409 23 588 Receptor kinase-like Gene Family AT1G11050 48.805 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lapu8g00409 Pkinase 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00409 - - gmx:100800481 942.569