Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00407 ATGTCGACGCAGAATCATCGATCATCGTTGTTATCCTCAACGGCGTCGTCTTTGGCAAAACGACACTCATCCATCGTGTCGTCCGGGAAGGCTGCCGAGAGAAAACCGCTCACCAACATCACCAATCAGAGGAATGCGCCTTCCTCTTCTTTGGTGTCAAGTTCAATTAAAGCTGCCAAGACCAAGAAAGAGGCTCCCGCAAGAAGCAGTAGCATCACAAGATCAACAGTTTGTGGGAATAAATTACCTGGGTTAAAGACTATTAACTCAAGCACAACTGTTATTCCAAAGGCTAATTCCTTACCACGAAGGAAGGATGCTTCTCCCGCAGAGGCCACAGTCTCTGTGGCGGTTCAGGACAGCATTCATGTTTCTTCTAGTAAATCAAATGCAAGGTCCGTTTCTATGGATGAGACGTTGTCTTCTTATTCTATCAAGAGTCCTGATGAAGTTGAATATCTGGACAACAGGGATGTCTCGGCTGTTGATTCAATTCAGAGAAAGACAAGCAATCTGAGCATTTGTGATACCACCAAGCCAGAAGGTAACATATGTAATAGGGAAATAGTTGATGAGTTTGAAAGAGAGGGCAAGGTTGTCGATATTGATAACATTTACTCTGATCCGCAGCTCTGTGCTACCTATGCTTGTGATATCTACAAGCACCTACGTCAATCTGAGGAAAAAAAAAGGCCTTCCACTGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGCGCAATATTAATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCACCTTGTACCTGATACATTGTATTTGACAGTGAACTACATTGATCGGTATCTTTCAGGAAATGCCATGAATAGACAAAGATTACAGTTACTTGGTGTTTCCTGCATGATGATTGCCTCTAAATATGAGGAGATTTGTCCACCACAGGTGGAAGAATTTTGTTATATAACTGATAATACGTACTTAAAAGAAGAGCTTTTACTAATGGAATCTGCTGTTTTGAATTATCTCAAGTTCGAAATGACAGCCCCAACGGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTGCCTATGATGTCCAGGAGCTACCTTCTCTTCAACTGGAGTGCCTAACCAACTTTATTGCGGAATTGTCTCTCTTGGAGTACAGCATGCTGTGTTATCCTCCATCACTGATAGCTGCCTCAGCAACTTTCCTTGCCAGATTCATACTTTTACCTTCAAAGAAACCATGGAATTCCGTATTGCAGCATTATGCACTATACCGGTCTTCTGATTTGTGTGCTTGTGTGAAAGATCTCCATCGCCTTTGTTGTAGTAGCGGTACTTCTAGTTTACCTGCTATCCGAGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTACATCCCCCTTTCAATTCCGCAAGAAGTTTTCCAGAATTGA 1446 0.4232 MSTQNHRSSLLSSTASSLAKRHSSIVSSGKAAERKPLTNITNQRNAPSSSLVSSSIKAAKTKKEAPARSSSITRSTVCGNKLPGLKTINSSTTVIPKANSLPRRKDASPAEATVSVAVQDSIHVSSSKSNARSVSMDETLSSYSIKSPDEVEYLDNRDVSAVDSIQRKTSNLSICDTTKPEGNICNREIVDEFEREGKVVDIDNIYSDPQLCATYACDIYKHLRQSEEKKRPSTDFMERIQNDINVSMRAILIDWLVEVAEEYHLVPDTLYLTVNYIDRYLSGNAMNRQRLQLLGVSCMMIASKYEEICPPQVEEFCYITDNTYLKEELLLMESAVLNYLKFEMTAPTVKCFLRRFVRAAAYDVQELPSLQLECLTNFIAELSLLEYSMLCYPPSLIAASATFLARFILLPSKKPWNSVLQHYALYRSSDLCACVKDLHRLCCSSGTSSLPAIREKYSQHKYKYVAKKYIPLSIPQEVFQN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00407 481 Pfam Cyclin, C-terminal domain 347 467 IPR004367 -
Lapu8g00407 481 MobiDBLite consensus disorder prediction 1 84 - -
Lapu8g00407 481 CDD CYCLIN_AtCycA_like_rpt1 208 343 - -
Lapu8g00407 481 ProSitePatterns Cyclins signature. 249 280 IPR006671 -
Lapu8g00407 481 PANTHER CYCLINS 149 459 IPR039361 -
Lapu8g00407 481 Pfam Cyclin, N-terminal domain 218 344 IPR006671 -
Lapu8g00407 481 Gene3D - 232 345 - -
Lapu8g00407 481 FunFam Mitotic cyclin 6 232 332 - -
Lapu8g00407 481 PIRSF Cyclin_A_B_D_E 2 478 IPR046965 GO:0016538|GO:0044772
Lapu8g00407 481 MobiDBLite consensus disorder prediction 1 24 - -
Lapu8g00407 481 MobiDBLite consensus disorder prediction 34 57 - -
Lapu8g00407 481 MobiDBLite consensus disorder prediction 66 84 - -
Lapu8g00407 481 SUPERFAMILY Cyclin-like 207 344 IPR036915 -
Lapu8g00407 481 SMART Cyclin_C_2 347 471 IPR004367 -
Lapu8g00407 481 Gene3D - 218 467 - -
Lapu8g00407 481 CDD CYCLIN_AtCycA-like_rpt2 347 462 - -
Lapu8g00407 481 SMART cyclin_7 254 338 IPR013763 -
Lapu8g00407 481 SMART cyclin_7 351 440 IPR013763 -
Lapu8g00407 481 FunFam Cyclin A1 333 467 - -
Lapu8g00407 481 SUPERFAMILY Cyclin-like 347 471 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00407 Lapu-Chr8 19737134 19741796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00407 4 481 Core Cell Cycle Gene Families AT1G44110 56.707 2.79e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00407 K06627 - gmx:100776207 709.523