LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g00399	ATGGCTCAAAATCACATCGCCACCGATTCTCCTCTCTCTCGTCGCATAGTTCGTGCCTTTCTCCACTTCCTAAGCTCTGTTGAACCGGGTCGTGGGATTGATGCTGAGGGGATTGAGGTTGCTAGAGAGTGTTTAACAGAGGCTTTCAAACTTAATTCATCTTCTGTTGCTGGGGATGATGTGAAATCTGATTCTTTGATTGACATATTCAAGTCTCTTGAAGCTAACAAGCAAAATGAAACTAGAAAGTCAAATGTTGATACTCGACGGGATTATGCGAATGCTTCCAGTTCATTCTCTGGTGAGAATCCTGCTCGTCGGATGAATCATTCTGAGGCATCAAAATCTACGGTGGAAGATTCAACACAGGGTCCTAGTGCTTTTGCATCTAGAGATGAACTGTGCGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTTCAGGAGAAAAGCTGATGGAAGTGATGACCCAGTGCAACTGGAAAAAGCGTGCTCTGTATTTGATGAGGCTTGTAAGGAGATGGTGAGATCTGGTTGTCAGCAGTTTTGTTTGAAGAGTTTGGCTGAATCACTAAAAACATTAGGTAACAGGGCAATGCAATCTAATAAATACAATGATGCTATTGATTTGTATAATTGTGCCGTTGCACTCAATGCAGAGAGTGCTGTTTACTTCTGCAACAGGGCAGCTGCTTACACTCAGATTAACAACTATTCTGAAGCAATTCAAGACTGTCTTAGATCTATCAGGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCCCTGCAGTTGGATCCAAATAATGAGTCTGTCAAAGAAAATATACGGGTGGCTGAGCAGAAATTGTTAGAAGAACAACACCGTGCACATCGCAACCAGAGTTCAACAAGATCATCTCGACGAGTTCCAAACCGATCTGCACAAGGATCAGGAAGCCAGACGTCATTTAACCCCAGCCAAATTGCAAGCGTGCTCAGGAACATAGCCTCAGGTGCACAACCATGGCAAGAAACCACCACAACCACTACTACTACTAGAGGAATTACAATTGGGGGAGAAACTATAAACCTGGATCAAATTCCGGAGAATCTAACAGGGACAGTTCAATCTGTGATGGAAATGTTATCTCGGAATGTACCCCCAGGGCAACCACGTGATCAAACGAATCCTAGAACAGGACCAAACTAA	1257	0.4304	MAQNHIATDSPLSRRIVRAFLHFLSSVEPGRGIDAEGIEVARECLTEAFKLNSSSVAGDDVKSDSLIDIFKSLEANKQNETRKSNVDTRRDYANASSSFSGENPARRMNHSEASKSTVEDSTQGPSAFASRDELCGQFFAALEKNHYFRRKADGSDDPVQLEKACSVFDEACKEMVRSGCQQFCLKSLAESLKTLGNRAMQSNKYNDAIDLYNCAVALNAESAVYFCNRAAAYTQINNYSEAIQDCLRSIRIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNESVKENIRVAEQKLLEEQHRAHRNQSSTRSSRRVPNRSAQGSGSQTSFNPSQIASVLRNIASGAQPWQETTTTTTTTRGITIGGETINLDQIPENLTGTVQSVMEMLSRNVPPGQPRDQTNPRTGPN*	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g00399	418	MobiDBLite	consensus disorder prediction	79	126	-	-
	Lapu8g00399	418	PANTHER	LD24721P	2	401	IPR047150	-
	Lapu8g00399	418	SMART	tpr_5	257	291	IPR019734	GO:0005515
	Lapu8g00399	418	SMART	tpr_5	189	222	IPR019734	GO:0005515
	Lapu8g00399	418	SMART	tpr_5	223	256	IPR019734	GO:0005515
	Lapu8g00399	418	MobiDBLite	consensus disorder prediction	90	107	-	-
	Lapu8g00399	418	ProSiteProfiles	TPR repeat profile.	189	222	IPR019734	GO:0005515
	Lapu8g00399	418	ProSiteProfiles	TPR repeat profile.	223	256	IPR019734	GO:0005515
	Lapu8g00399	418	ProSiteProfiles	TPR repeat profile.	257	291	IPR019734	GO:0005515
	Lapu8g00399	418	Coils	Coil	291	311	-	-
	Lapu8g00399	418	Pfam	TPR repeat	232	271	-	-
	Lapu8g00399	418	Gene3D	Immunoglobulin FC, subunit C	3	76	-	-
	Lapu8g00399	418	FunFam	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	2	76	-	-
	Lapu8g00399	418	Pfam	Homodimerisation domain of SGTA	14	71	IPR032374	-
	Lapu8g00399	418	Gene3D	Tetratricopeptide repeat domain	185	343	IPR011990	GO:0005515
	Lapu8g00399	418	MobiDBLite	consensus disorder prediction	319	341	-	-
	Lapu8g00399	418	FunFam	Tetratricopeptide repeat (TPR)-like superfamily protein	184	337	-	-
	Lapu8g00399	418	SUPERFAMILY	TPR-like	188	302	IPR011990	GO:0005515
	Lapu8g00399	418	MobiDBLite	consensus disorder prediction	307	341	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g00399	Lapu-Chr8	19563645	19573468	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g00399	187	287	U-box Gene Family	AT3G07370	29.703	2.07e-09	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g00399	K16365		-	gmx:100799770	587.8