Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00350 ATGGAACACCAACAACTGCAACAAAACAGCATCCTATGCAAATACACTGTGCACCAAAGTTTCATGAAAAAACACACAAAACCAAAAGCCACTTCGCGTTCGCGCAAACTCATTTCCATATCCGTAACCGATCCATTCGCCACGGACTCATCCAGCGACGATGAAAGACACCCTCGCCGAAGAGTGAAGCGCTACGTCAACAGAATCGAACTTCACCCCGCGTGCAAAACCGTCGCTTCTAAGAAGAGACACGCCGAAGAAACCACTACTATCCGGGCGAAAGTGAAGAATTCTGGGAGCGAGAAGAAGTTCCGGGGCGTGCGGCAGCGGCCTTGGGGGAAATGGGCGGCGGAGATAAGAGATCCCGCGAAGCGCGTGAGGATCTGGCTCGGAACTTTCGACACCGCCGAGGAAGCTGCGTTGGTTTACGACAATGCGGCGATTACGCTTCGCGGCCCCGACGCATTGACAAACTTCACGGCGCACCCGGGGAAGCCAGCGACCAAGAAAGAAGTCCCCACCGGAAAACCGGAAATGAATGTGGTGGTGAAGCCGGAGACCGAAGTCTCCGGTTACGACTCAAGCGATGAGTGCTGTCACAACCTCTCTTCGCCCACGTCGGTTCTCCGCTTCAACGAGCCGGAGAAACCGGAACATCCGTTTGCCGGTCGAAGTCGAATGGTGGAAGAGCTCGACAGCGAGATGGTGTCGTTTCACGAAAATAGCGAGTTTTTGCTACAGGACATGCCATGGGATGACGTGTTTAACTTTCCGGTTATGTTTGACGAGCCTGTTTCACACTTGTTTGACGAAACTACGCCGTTTTCGGTTAATGACGGTTTCGGTGGCGTTACAAATTTTGAAGAAAGATGCTCGCCGTCAACGTCGTTATGCCAAGTAGACGACTATTTCCAAGACATTTTGTTAGGGTCAGATCCTCTGGTGGCTCTCTGA 954 0.5241 MEHQQLQQNSILCKYTVHQSFMKKHTKPKATSRSRKLISISVTDPFATDSSSDDERHPRRRVKRYVNRIELHPACKTVASKKRHAEETTTIRAKVKNSGSEKKFRGVRQRPWGKWAAEIRDPAKRVRIWLGTFDTAEEAALVYDNAAITLRGPDALTNFTAHPGKPATKKEVPTGKPEMNVVVKPETEVSGYDSSDECCHNLSSPTSVLRFNEPEKPEHPFAGRSRMVEELDSEMVSFHENSEFLLQDMPWDDVFNFPVMFDEPVSHLFDETTPFSVNDGFGGVTNFEERCSPSTSLCQVDDYFQDILLGSDPLVAL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00350 317 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Lapu8g00350 317 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Lapu8g00350 317 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Lapu8g00350 317 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Lapu8g00350 317 SUPERFAMILY DNA-binding domain 103 160 IPR016177 GO:0003677
Lapu8g00350 317 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Lapu8g00350 317 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Lapu8g00350 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 224 - -
Lapu8g00350 317 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Lapu8g00350 317 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00350 Lapu-Chr8 18435487 18436440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00350 13 309 AP2-EREBP Transcription Factor Family AT4G27950 39.937 1.45e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu8g00350 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00350 - - gmx:100805277 405.986