Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00344 ATGGAGATGGACAGCATTGACTGTGTGTCATTCTCTGATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATCCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTCGTAATGGCGGTGCTAATAACAATAATGTTATGGGAGCCACAGCCATTTCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGTACCCTCCAATTCACCAGAAAAAAAGAGTAACATATACTTTCTTGCAGTGCCACAATGGACACACATTGTGTTCCACGTGCAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATATTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTTCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCCAATCCTCGTGAAGTAGAGAATGCAACCTGGATGCTCACCGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTCGAAGCTTTTCAGCTTGGCATGGCTCCCGTTTACATGGCATTCCTTCGATTTATGGGTGATGAGAACGAGTCTCGTAACTACAGCTACAGCCTTGAGGTTGGGGCAAATGGCAGAAAACTCATTTGGGAGGGAACACCACGAAGTATTCGCGATAGCCACCGGAAAGTCAGGGATAGCCACGACGGTCTCATTATTCAACGAAACATGGCCTTATTTTTCTCTGGAGGTGATAAGAAGGAGCTGAAACTAAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGCATACCAAATCTTTGCAGCTAA 1017 0.4484 MEMDSIDCVSFSDGMDEDEIQHHTLHPHHHSEFSSNKPRNGGANNNNVMGATAISPATSVHELLECPVCTNSMYPPIHQKKRVTYTFLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDISFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENESRNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00344 338 FunFam E3 ubiquitin-protein ligase SINAT3 126 184 - -
Lapu8g00344 338 MobiDBLite consensus disorder prediction 25 46 - -
Lapu8g00344 338 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 181 317 IPR008974 GO:0005515
Lapu8g00344 338 SUPERFAMILY RING/U-box 65 117 - -
Lapu8g00344 338 ProSiteProfiles Zinc finger RING-type profile. 66 112 IPR001841 -
Lapu8g00344 338 FunFam E3 ubiquitin-protein ligase SINAT5-like 185 317 - -
Lapu8g00344 338 SUPERFAMILY TRAF domain-like 129 321 - -
Lapu8g00344 338 ProSiteProfiles Zinc finger SIAH-type profile. 129 189 IPR013010 GO:0008270
Lapu8g00344 338 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 323 - -
Lapu8g00344 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 128 IPR013083 -
Lapu8g00344 338 CDD RING-HC_SIAHs 64 112 - -
Lapu8g00344 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 180 IPR013083 -
Lapu8g00344 338 CDD Sina 190 318 - -
Lapu8g00344 338 Pfam Seven in absentia protein family 118 317 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00344 Lapu-Chr8 18331829 18341012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00344 57 324 C3H Transcription Factor Family AT2G41980 77.985 2.03e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00344 K04506 - cave:132180687 640.188