Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00323 ATGGAACCCCAGAAAAGTCCATCAGTAGATGACAGCTTATTTGATATTTTCCAAGATACTGAGTTTGGGGACACCGACTTTGGTGGAGGGGACCTCCTTTCCATTTTGGAGAGCCTACAAGACTTGAAAGATTTTCCCCCCATCAACAATGAAGCTTTTATTAGCCCAACTTCTAAAGGAAACGACCAAAACTCAACAATGGAGTCCCAAAAGATCTCAATATCTTCAAGTGCTCCACAAGATTCTGAAACTGACCCTGAAATCTCACCCAAAAGCAAGAGAAAAAAGCTTAGCCCCCCCACCTTGTCAGAGGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGGCGAAAGCAAATGAATGAGAACTTGTCCGTACTGAGGTCACTTGTGCCTTCCTTCTATGTCAAACGGGGAGACCAAGCATCAATAATTGAAGGTGTGGCTGATTACATTAACGAGTTGCAACAGTTGCTACAATGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTCTCAAGCACAAGGCATTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTGCCCATTAGTCCAAGGACTCCACAGCCTGGTAGCCCGTACAAGCCCAGGTTGCAGCCAGGTTACCTTTCCCCAACCATAGCCAACTCTCCCACTTCTTCCGCTTCTTCTTCCATCAACGATAATATCAACGAGCTTGTTGCCAATTCCAAGTCTGTTATTGCCGATGTTGAGGTCAAGTTTTCAGCTCCACATGTTCTTCTGAAGACAGTTTCACCCCCAATTCCTGGACAGGCTCTGAGAATAATATCAGCTCTTGAACAGCTAGCACTCGAAATTCTGCATGTGAATATCAGCATTGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1008 0.4464 MEPQKSPSVDDSLFDIFQDTEFGDTDFGGGDLLSILESLQDLKDFPPINNEAFISPTSKGNDQNSTMESQKISISSSAPQDSETDPEISPKSKRKKLSPPTLSEEPQKVSHITVERNRRKQMNENLSVLRSLVPSFYVKRGDQASIIEGVADYINELQQLLQCLEAKKQRKVYSDVLSPRLVSSTRHSPLSPRKPPLSPRINLPISPRTPQPGSPYKPRLQPGYLSPTIANSPTSSASSSINDNINELVANSKSVIADVEVKFSAPHVLLKTVSPPIPGQALRIISALEQLALEILHVNISIADETMLNSFTIKIGIECQLSAEELAQQIQQTFC* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00323 335 Gene3D - 101 171 IPR036638 GO:0046983
Lapu8g00323 335 MobiDBLite consensus disorder prediction 192 217 - -
Lapu8g00323 335 MobiDBLite consensus disorder prediction 46 118 - -
Lapu8g00323 335 SMART finulus 112 163 IPR011598 GO:0046983
Lapu8g00323 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Lapu8g00323 335 Pfam Helix-loop-helix DNA-binding domain 107 158 IPR011598 GO:0046983
Lapu8g00323 335 MobiDBLite consensus disorder prediction 51 85 - -
Lapu8g00323 335 MobiDBLite consensus disorder prediction 181 238 - -
Lapu8g00323 335 Coils Coil 147 170 - -
Lapu8g00323 335 MobiDBLite consensus disorder prediction 86 101 - -
Lapu8g00323 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 174 IPR036638 GO:0046983
Lapu8g00323 335 PANTHER TRANSCRIPTION FACTOR FAMA 14 334 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00323 Lapu-Chr8 17636772 17639603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00323 15 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 48.023 1.59e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g00323 HLH 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00323 K20558 - gmx:100809717 491.886