Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00302 ATGAGTACTGCTCAACAAGAGAAGTTTGTTAGGTTTCGAGATTGGAATTTGGAGAAGAGTTCTGAGAGCAATTATCCTGAGATTCAAATTGCACACACAGGGATAATTAGGACTACATTAAGTTCAGTTTCGGAGAAGTTTCAAAATGGTTTGGAATCTGGTTCTGATAGGATAAAAAGATTCAGAACATCATTCAAATCTTTTCCCTATAGTAGTGTTCTATCTAGAAGCTTTAGTTCTAGAAAGAAAATACTCGATCCACAGGGTCCATTCCTTCAAAGGTGGAACAAGATTTTTGTATTATTATGTGTTATTGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCGGTTATTGACGATGAGAAGAAATGTCTTTCACTGGACAGTAAGATGGAGATTACAGCAACTGTTTTAAGGTCTTTCTCTGATGCTTTTTATATAATCCACATGATCTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAAGAGGTATTTATCATCATATTTCTTTGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTTAATACCAAGAACTTGCTGAAATTTGTTGTCTTCTTCCAATATGTTCCTCGTTTACTGCGGATCATTCCATTATATACAGAAGTTACAAGGGCCTCCGGCATTCTCACGGAAACTGCTTGGGCTGGAGCTGCATTTAATCTATTTCTTTACATGCTTGCAAGTCATGTTGTTGGAGCATTTTGGTATTTGTTTTCTATAGAACGGGAAACCACATGTTGGCAAGAAGCCTGTCGAAGTAATTCAGTGTGTAACAAGGCAGATATGTATTGTAATGATGATTATTGGGGTGGATTGAGCAACATTTTGACATTCCTGAATACTTCTTGCCCAATTCAGAACGAAGATAAAAAGCTCTTTGATTTTGGAATGTTCCTTGATGCTCTTCAATCAGGTGTTGTGGAGTCAAGAGATTTTCCACAGAAATTCTTTTACTGCTTTTGGTGGGGATTAAAAAATTTGAGTTCTCTGGGTCAGAACCTGGCAACAAGTACCTATGTTTGGGAAATATGTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTAAAGAGGAGGGATGCAGAACAGTGGATGTCTCACCGATTGCTTCCTGACGGCCTGCGAGTGCGAATCAGACGATATGAACAATACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGGTTCGTAATCTTCCCAAGGATTTGAGAAGGGACATTAAGCGTCATCTTTGTTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCGGTGCTTTTCACTGAAGAAAGCTACATAGTGAGGGAAGGAGACCCAGTTGATGAGATGCTCTTCATAATGCGTGGCAAGTTATTGACCATAACAACTAATGGCGGAAGAACCGGTTTCTTCAACTCAGAGTATCTGAAAGCTGGTGACTTCTGTGGAGAGGAGCTTCTGACGTGGGCCTTGGATCCCCATTCTTCATCCAACCTTCCCACCTCAACCAGAACTGTTCAAACTCTTTCAGAAGTGGAAGCCTTCGCTCTCAAAGCTGATGACTTGAAGTTTGTGGCATCACAGTTTCGGCGCCTTCACAGTAAGCAGCTCCGCCACACTTTCAGGTTCTACTCCCAACAATGGCGCACCTGGGCTGCGTGTTTCATTCAAGCTGCATGGCGGCGCTATAGTAAGAGGAAGCTTGAAGAATCCCTGGATGAAGAGGAGAATAGACTGCAAAATGTATTAGCTAAATCTGGTGGAAGCTCACCTAGCCTTGGTGCTACAATATATGCTTCGAGGTTTGCTGCTAATGCTCTTACATTGCTACGACGCAACGGCACAAAGGGTAGGGTGCCCGAAAGATTACCCCCTATGCTGCTTCACAAGCCTGCAGAACCTGATTTTACTGCGGATGAGCAATAG 2154 0.4155 MSTAQQEKFVRFRDWNLEKSSESNYPEIQIAHTGIIRTTLSSVSEKFQNGLESGSDRIKRFRTSFKSFPYSSVLSRSFSSRKKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDSKMEITATVLRSFSDAFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLSSYFFVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRIIPLYTEVTRASGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACRSNSVCNKADMYCNDDYWGGLSNILTFLNTSCPIQNEDKKLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEICFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRVRIRRYEQYKWQETRGVDEDNLVRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLDEEENRLQNVLAKSGGSSPSLGATIYASRFAANALTLLRRNGTKGRVPERLPPMLLHKPAEPDFTADEQ* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00302 717 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Lapu8g00302 717 SMART cnmp_10 489 620 IPR000595 -
Lapu8g00302 717 Gene3D - 94 413 - -
Lapu8g00302 717 Coils Coil 641 661 - -
Lapu8g00302 717 Gene3D Jelly Rolls 487 607 IPR014710 -
Lapu8g00302 717 SUPERFAMILY Voltage-gated potassium channels 86 411 - -
Lapu8g00302 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 70 712 - -
Lapu8g00302 717 FunFam Cyclic nucleotide-gated ion channel 1 487 605 - -
Lapu8g00302 717 Pfam Ion transport protein 94 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu8g00302 717 CDD CAP_ED 489 620 IPR000595 -
Lapu8g00302 717 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Lapu8g00302 717 Gene3D Helix hairpin bin 415 480 - -
Lapu8g00302 717 Pfam Cyclic nucleotide-binding domain 510 600 IPR000595 -
Lapu8g00302 717 SUPERFAMILY cAMP-binding domain-like 418 611 IPR018490 -
Lapu8g00302 717 MobiDBLite consensus disorder prediction 696 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00302 Lapu-Chr8 16616726 16623541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00302 5 716 Ion Channels AT5G53130 78.382 0.0 1144