LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g00242	ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAACCCCGTCAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCCTACGAGCTTTCAATCCTATGTGACATTGATATTGCCGTTATAATGTTTTCTCCTTCCGGTCGTGTCAACCACTTTTCCGGTAGGAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAGCTACCGGGTATTCAGAATAAGGAGTATTTGCTTAGGACACTTCAGCAGCTGAGGAGTGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGATATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATATGAACCCGACCCACTAAAGATGTCATCAATGGCAGATCTTGAAAACAGTGAAAAGCACCTTGTAGATGTCTTGACAAGAGTCATGCAAAGAAAGGAATACTTAATGAGCCACCATCTATCTTCGTTTGATCCATCTAGTATTCAGGGAATACCAACCTCTTTCGACAATGTAGGTTGGTTGCAGGATGGGAGCCAAAATCATGCTCAGATTTTTGATGCATCTGCTCCTTTAGATCCTCTCAGGGACCTGTCTTCAACAGTGTATGGTTCATTTTCCCAAGGGACAAGTTCAAATGCTGATCCACGAGGCATGGGGGAGTGCCACGTGTCAAATCCAAGTGATGGGACCCTTCAAGCATGGCCTCAAGGGTACTCATTGTATCCTCACCATCACATTCAGCATGAGATGGTGGGACCCGACATGCCAGATATGATGCCACATGGACAGGTCAACCTTCCAATCACTGCCTCACACGTGGAACCACCCAAGAATGAACCTGTAGAATATGACCAATCCAAACAACAACCTCATCCCTCTCATCATCATCACCTTAATGCACAA	1002	0.4391	MGRVKLEIKRIENPVNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLTRVMQRKEYLMSHHLSSFDPSSIQGIPTSFDNVGWLQDGSQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNADPRGMGECHVSNPSDGTLQAWPQGYSLYPHHHIQHEMVGPDMPDMMPHGQVNLPITASHVEPPKNEPVEYDQSKQQPHPSHHHHLNAQ	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g00242	334	Coils	Coil	116	150	-	-
	Lapu8g00242	334	Gene3D	-	15	86	IPR036879	GO:0003677\|GO:0046983
	Lapu8g00242	334	MobiDBLite	consensus disorder prediction	295	334	-	-
	Lapu8g00242	334	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lapu8g00242	334	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Lapu8g00242	334	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Lapu8g00242	334	MobiDBLite	consensus disorder prediction	235	258	-	-
	Lapu8g00242	334	FunFam	MADS-box transcription factor 41	13	92	-	-
	Lapu8g00242	334	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Lapu8g00242	334	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lapu8g00242	334	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lapu8g00242	334	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lapu8g00242	334	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	272	-	-
	Lapu8g00242	334	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lapu8g00242	334	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g00242	Lapu-Chr8	14220289	14224350	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g00242	1	303	Type I MADS-box Gene Family	AT1G22130	58.599	1.32e-119	346

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lapu8g00242		SRF-TF	1.3e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g00242	-		-	pvu:PHAVU_008G170400g	604.364