Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00222 ATGGAGCACGCCACTCCCTCACATTCGCTCTCCCCTCCCTTCCGTTCCATCCCCTTCGTTCCCTGCCATGTGTCCTCCCGCGATTTGCTCGCTGATCCATTCTCCGACGAGGTCTTCGCCAAGCTCCTCCTCACTCCCCTCCCTCACCCCTTCCACCATAACCACCAAAACGACGAAAGCAACAGCCAAAAGGACGACGACGACGAGCGCGAGTGCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACGCCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGTGCTGACTCCGTCTTTCCTCCGCTTGATTTCCGCGCCGATCCTCCCGTCCAACTCCTCTCCGTCACCGACGTCCACGGCGTCGCGTGGCGATTCCGCCACATTTACCGTGGCACTCCGCGTCGGCACCTCTTCACCACTGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTTATCGCCGGCGATTCCGTCGTGTTCGTCAAGGACTCCGACGGGAACGTCTCAGTCGGGATCCGCCGTGCGACGCGGTTCTCCTCCTCTACCTCTCTTGTGGATGTTGAGCAGCCGCCGGTGCAGGGGGAGGGGTTTTCGCGTAGCGCGACTGGAAGAGTGTCGCCAAAGGCGGTTGCGGCCGCCGCGGAGTCCGTGGTGCGGAACGCGCCATTTGAGGTGGTGTATTATCCGAGGGCGGGTTTTGCGGATTTCGTGGTGAGTGCTGAGGTTGTGGAGGACGCCATGAAGTGCGCGTGGGTTGGTGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGAATGACGTGGTTTCAAGGGACCGTGACTTCTGCCTATGCCTCTGACAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCCGAAGTCTTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTGGAACTTGTTTCCCCCTCACTTGCACTCCATACAGCGTTTTCCCCTTCAAAAAGGTTTAGAGTTGACCCGGGTTCTGGACTGTTAAATGATAGGGAGGGAGACCCCTTCTTGCCTATGACAGGTTTCCCTAGCTCAACTATGGGAAACATGGATAAAAAATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTCCATCAAGTTTTTCTAACTTTTTAAACGATAACTCTTATCTGTATATGGGTAGTAGTTCCTTTGGGAACAATACTGTGCAAAGTTTGGGAATTGTTTCAACAGAGCTAAACATTAGCAGTTCTCAATCAGATGACCTGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACTGAGTTTACTGGGACCCGGCACTGCAACACCAGAGTTGGTTCTGGTTCAATTCTGCTATTTGGTAAGATCATACACCCTGCCGAAAGTCATTTACAAGATGCTGCTGATTACATGGAACGTGATGGCTGCAGCAGGGTCAGCAAAGAAACTGAAGACAGTTGA 1506 0.5339 MEHATPSHSLSPPFRSIPFVPCHVSSRDLLADPFSDEVFAKLLLTPLPHPFHHNHQNDESNSQKDDDDERECQNGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDSDGNVSVGIRRATRFSSSTSLVDVEQPPVQGEGFSRSATGRVSPKAVAAAAESVVRNAPFEVVYYPRAGFADFVVSAEVVEDAMKCAWVGGMRVKIGMETEDSSRMTWFQGTVTSAYASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPSLALHTAFSPSKRFRVDPGSGLLNDREGDPFLPMTGFPSSTMGNMDKKLLSYDTFPAGMQGARHDLFSPSSFSNFLNDNSYLYMGSSSFGNNTVQSLGIVSTELNISSSQSDDLSPHSQSSLHSFDTEFTGTRHCNTRVGSGSILLFGKIIHPAESHLQDAADYMERDGCSRVSKETEDS* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00222 501 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 474 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu8g00222 501 SMART B3_2 79 181 IPR003340 GO:0003677
Lapu8g00222 501 FunFam Auxin response factor 77 181 - -
Lapu8g00222 501 SUPERFAMILY DNA-binding pseudobarrel domain 73 187 IPR015300 -
Lapu8g00222 501 ProSiteProfiles B3 DNA-binding domain profile. 79 181 IPR003340 GO:0003677
Lapu8g00222 501 Gene3D - 76 181 IPR015300 -
Lapu8g00222 501 CDD B3_DNA 78 179 IPR003340 GO:0003677
Lapu8g00222 501 MobiDBLite consensus disorder prediction 50 71 - -
Lapu8g00222 501 Pfam Auxin response factor 218 293 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu8g00222 501 MobiDBLite consensus disorder prediction 52 71 - -
Lapu8g00222 501 Gene3D - 257 323 - -
Lapu8g00222 501 Pfam B3 DNA binding domain 79 180 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00222 Lapu-Chr8 13481915 13486191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00222 1 501 B3 DNA Binding Superfamily AT1G77850 46.642 2.16e-136 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu8g00222 B3 1.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00222 - - gmx:100805638 757.673