Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu8g00207 | ATGGAGCGCTATGAGATTCTCAAAGATATTGGCTCTGGGAATTTTGCTGTGGCCAAACTGGTTAGGGACAGCTGCACCAGTGAGCTTTTTGCTGTCAAGTTTATTGAGAGAGGCCAGAAGATTGATGAGCATGTTCAGAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTATTAGATTCAAAGAGGTCTTGCTGACACCAACTCATCTAGCAATAGTAATGGAGTATGCTTCTGGAGGAGAACTATTTGAGAGGATATGCAATGCTGGTAGATTCAGTGAGGATGAGAAACTTCGTTCCTCAAGTCGTGTTACTTTTCACCAGGCAAGATTTTTCTTTCAGCAATTGATATCTGGAGTGAGTTACTGTCATTCAATGCAAATTTGTCATAGAGATCTGAAGCTTGAAAACACACTCTTAGATGGAAGCACTGCACCGCGACTTAAAATTTGTGACTTTGGTTACTCAAAGTCATCAGTATTGCATTCTCAACCTAAGTCTACGGTAGGAACTCCAGCTTATATTGCACCTGAGGTTCTTACAAGGAAAGAATATGACGGAAAGATTGCAGATGTATGGTCTTGTGGAGTCACCTTATATGTGATGTTAGTTGGGGCTTATCCTTTTGAAGACCCTTCAGACCCAAGAAACTTCAAAAAAACTATTGGTAAGATACTTAGTGTCCAGTACTCAGTCCCTGATTATGTACGAGTTTCCATGGAATGTAGACATCTTCTATCACAAATATTTGTGGCAAGTCCTGAAAAGAGAATAACAATACCAGAAATTAAAAACCATCCATGGTTTTTAAGGAACTTACCCATAGAACTGATGGAAAGTGGAAGCTGGCAAATAAATGATGTAAATAATCCATCACAAAGTGTTGAGGAAGTACTGTCTATAGTACAAGAGGCAAGAAATTCTCTTAACGTTCCAATTGTTGGTGGCCTTCTTACTGAGGGAAGCATGGACCTGGATGACTTGGATGCTGATGAAGAAGATCTTGAAGATGTAGAAACAAGTGGAGAATTTGTGTGTCCTCTTTAA | 1056 | 0.3958 | MERYEILKDIGSGNFAVAKLVRDSCTSELFAVKFIERGQKIDEHVQREIMNHRSLKHPNIIRFKEVLLTPTHLAIVMEYASGGELFERICNAGRFSEDEKLRSSSRVTFHQARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPSDPRNFKKTIGKILSVQYSVPDYVRVSMECRHLLSQIFVASPEKRITIPEIKNHPWFLRNLPIELMESGSWQINDVNNPSQSVEEVLSIVQEARNSLNVPIVGGLLTEGSMDLDDLDADEEDLEDVETSGEFVCPL* | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu8g00207 | 351 | ProSiteProfiles | Protein kinase domain profile. | 4 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lapu8g00207 | 351 | FunFam | Serine/threonine-protein kinase SAPK2 | 1 | 79 | - | - | |
| Lapu8g00207 | 351 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 79 | - | - | |
| Lapu8g00207 | 351 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 131 | 143 | IPR008271 | GO:0004672|GO:0006468 | |
| Lapu8g00207 | 351 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524 | |
| Lapu8g00207 | 351 | CDD | STKc_SnRK2 | 3 | 271 | - | - | |
| Lapu8g00207 | 351 | Gene3D | Transferase(Phosphotransferase) domain 1 | 80 | 278 | - | - | |
| Lapu8g00207 | 351 | PANTHER | SERINE/THREONINE KINASE | 2 | 293 | - | - | |
| Lapu8g00207 | 351 | Pfam | Protein kinase domain | 4 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lapu8g00207 | 351 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 292 | IPR011009 | - | |
| Lapu8g00207 | 351 | FunFam | Serine/threonine-protein kinase SRK2E | 80 | 280 | - | - | |
| Lapu8g00207 | 351 | SMART | serkin_6 | 4 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu8g00207 | Lapu-Chr8 | 12932659 | 12936133 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu8g00207 | 3 | 291 | CBL-interacting serine-threonine protein kinases | AT4G24400 | 39.933 | 2.00e-66 | 213 |
Transcription factors information