Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00199 ATGGTGTTATTGGTGATCTTCTTGCCGTTTCTAGTTCAACAAATATGTGCTGCGAATGAGCAAGAGCATGCTATTGATTGTCCCACTTCTTCCTGTGGGAAAATCGCAAACATAAGCCGGCCATTTAGATTGAAAAGTGACCCATCATATTGCGGCGACAGCAGGTATGAACTGGATTGTGAAAATAATGTTGCGGTGTTATATTTGTACTCGGGGAAATATCATGTGCAGGCAATCAACTACCATAATTTCACAATCCGAGTGGTTGATCCGGGAGTTGAAGAACCAAGTTGCTCCTCCCTTCCTCGCTATTTCTTGTCTCAATCCAATTTCACTGATGCTTATCATGGTGACGCTATCAATCCATACCGAGCCACTCAAAACCAATTCTCAGAAGTTAGTTCTTACGAGAGGAATCTTTTGGAGCACATAATTTACTTGAATTGTAGCCATCCAGTGAGTGAGAATTATAAGTACGTGAATACTACGCCGTGCGTGAAGTGGGAGTCCAAAGGCTATATATATGCTTTCGCTGGAGACTTAACAGCAGCGGACTTTGAAGTTGGTTGTCGTATAAAGCTGGTTTCTCCCACATCTTGGTGGGGTTTGGAAGCAAATAAATCTTCCTACACTCTGATGCACAGGGCGCTAGTTCATGGATTTGAGATGTCGTGGTTGCATTTCGCCTGTGCGGATCGATGTGGTGGAAACTCAGCTTATAGCGAGTGCTCTTTCCACTCTTCCATTGCCAACCTTCGATGCTCGCTCTATTGCAACGATATATTCGGACTACTGCTTACGGAATGTGGTACAGATATATGGTCACAGGTGCTAACTTATCCTGCATATTTTGTGAGAAATGTTTGGACAGGAATGCTTGAAACAATAAAAAGAGGAAACCTAAGATTTGAAGAAGTTGTTCTCAGCTTTGAATCAGTATCCTATATTATTGGACGCTATATTCTACCATTATTCTTGCTAGTCAGATTTTGGTTTGGGGTGACATTACTTACAGTGGTTGTGATATACAAATGGCGGAAAAGGCATTTGTCAATATATGAAAATATTGAAAATTATCTAGAACATAATAACTTGATGCCTATTAGATACTCATACAAGGAAATCAAAAAAATGGTTAAAGGTTTTGAGCAAAAACTAGGTCAAGGAGGCTATGGCTCTGTGTATAAGGGAAAGTTGTCGAGTGGAGCTTATGTAGCAATAAAGATGTTAGATAAATCAAAAGGTAATGGACATGACTTTATTAGCGAAGTAGCTACCATTGGAAGAATTCATCATCAGAATGTGGTACAATTAATTGGATTTTGTGTTGAGGGTTCTAAATGTGCTCTAGTATATGAATTCATGTCCAATGGGTCTCTTGATAAAATTATTTTTTCTAAAGAGAGGAGTATAGAGTTTGGCTATGAAAAAATATATAACATATCAATTGGGATAGCTCGTGGGATTTCTTATCTCCACCATGGATGTGAGATGCAAATTTTGCATTTTGATATAAAGCCCCACAATATTCTACTTGATGATAATTTTATTCCAAAAGTTTCTGATTTTGGAATGGCAAAGTTATATCCCATAGATAATAATAGCATTGTCACCATGACAACAGTGGGAGGAACAATTGGATATATGGCTCCAGAATTGTTTTATAAAAATATTGGGAGAATATCATATAAATCTGATGTTTATAGTTTCGGAATGCTTTTAATGGAGATGACAAGTAGGAGGAAAAACTTAAATCCCCACATAGAGCATTCGAGCCAAATTTATTTTCCCTCTTGGGTTTATGATAACTTGAGAGAAGAGAAAGATATAGAAATGGAAGATATCACAGAGGAAGAAAATAAAATAGCAAAGAAGATGTTTATAGTTGCACTTTGGTGTATACAAATGAACCCCAATGATCGTCCTTCCATGAATAAAGTAGTGGAAATGCTAGAAGGAGACATTGAAAGCTTGGAAATTCCTCAAAATTTTTCTTTATATCCATATGAAGCGACAGACGACTCTAAAAGAATAATGTCCAGTGAATTTATTAGTTCTTCTAGTTGTTCTATGGAAATTGAAATGGAGAATACTATTTGA 2100 0.3729 MVLLVIFLPFLVQQICAANEQEHAIDCPTSSCGKIANISRPFRLKSDPSYCGDSRYELDCENNVAVLYLYSGKYHVQAINYHNFTIRVVDPGVEEPSCSSLPRYFLSQSNFTDAYHGDAINPYRATQNQFSEVSSYERNLLEHIIYLNCSHPVSENYKYVNTTPCVKWESKGYIYAFAGDLTAADFEVGCRIKLVSPTSWWGLEANKSSYTLMHRALVHGFEMSWLHFACADRCGGNSAYSECSFHSSIANLRCSLYCNDIFGLLLTECGTDIWSQVLTYPAYFVRNVWTGMLETIKRGNLRFEEVVLSFESVSYIIGRYILPLFLLVRFWFGVTLLTVVVIYKWRKRHLSIYENIENYLEHNNLMPIRYSYKEIKKMVKGFEQKLGQGGYGSVYKGKLSSGAYVAIKMLDKSKGNGHDFISEVATIGRIHHQNVVQLIGFCVEGSKCALVYEFMSNGSLDKIIFSKERSIEFGYEKIYNISIGIARGISYLHHGCEMQILHFDIKPHNILLDDNFIPKVSDFGMAKLYPIDNNSIVTMTTVGGTIGYMAPELFYKNIGRISYKSDVYSFGMLLMEMTSRRKNLNPHIEHSSQIYFPSWVYDNLREEKDIEMEDITEEENKIAKKMFIVALWCIQMNPNDRPSMNKVVEMLEGDIESLEIPQNFSLYPYEATDDSKRIMSSEFISSSSCSMEIEMENTI* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00199 699 ProSiteProfiles Protein kinase domain profile. 380 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00199 699 Pfam Protein kinase domain 383 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00199 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Lapu8g00199 699 SMART serkin_6 380 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00199 699 FunFam serine/threonine-protein kinase PBS1-like 350 454 - -
Lapu8g00199 699 Gene3D Transferase(Phosphotransferase) domain 1 455 663 - -
Lapu8g00199 699 PANTHER RUST RESISTANCE KINASE LR10-RELATED 353 670 IPR045874 GO:0004672
Lapu8g00199 699 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Lapu8g00199 699 Coils Coil 601 621 - -
Lapu8g00199 699 Gene3D Phosphorylase Kinase; domain 1 354 454 - -
Lapu8g00199 699 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Lapu8g00199 699 FunFam PR5-like receptor kinase 455 662 - -
Lapu8g00199 699 SUPERFAMILY Protein kinase-like (PK-like) 365 652 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00199 Lapu-Chr8 12643377 12647660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00199 6 661 Receptor kinase-like Gene Family AT1G66910 33.088 2.17e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00199 Pkinase 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00199 - - vun:114195039 1077.77