Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00197 ATGGTGATGTGGAGAGAGATAGTGTTATTGGTGATCTTCTTGCTGTTTCTAGTCCAACAAATATGTGCTAGGAATGAGCAAGAGCATGCTATTGATTGCCCCCATTATTCCTGTGGGAAAATCGCAAACATAAGTCGTCCATTTAGATTGAAAGGTGACCCCATATATTGCGGCGACAGAAGGTATGAACTGAGCTGTGAAAATAATGTTACGGTATTAACTTTGTATTGGAGAAAATATCATGTGCAGGCAATCAACTACAATAATTTCACAATCCGAGTGGTTGATCCAGGAGTTGAAGAACCAAGTTGCTCCTCCCTTCCTCGCCATTTCTTGTCTCAATCCAATTTCAGTGATGCTTATCATGGTGGCATCATGGATCCATACCGAGCCACTCAAAGCCAATTCTCTGAAGTTGGTCCGTACGAGAAGAGTCTTTTCAAACACATAATTTACTTGAATTGTAGCCATCCAGTGAGCGAGAATTACAAGTACGTGAATACTACGCCGTGCGTGAAGTGGGAGTCCAAAGGCTACATATATGCTATCGCTGGTGATTTAACAGCAGCGGACTTTGAAGTTGGTTGTCGTATAAAGCTGGTTTCTCCCACATCTTGGTGGGGTTTGGAAGCAAATAAATCTTCCTACACTCTGATGCACAGGGCGCTAGTTTATGGATTTGAGATGCCGTGGTTGCATGTCGCCTGTGCTGCTCAATGTGGCGGAAACTCAACTTATGATGAGTGCTATTTCGACTCTTCCATCCTCCAGCTTCAATGCTTGCACTACTGCGACGATATATTCGGAGGACTGCTAACAGAATGTGATTTTCTGAGTAATGTTTGGACAGGACTGCTTGAAACAATAAAAGGAAACCTAAAATCTGAAGAAGTTGTCCGCAACTTTGAACCGGAAATCAAGAACATGGTTAGAGGTTTCAAAGAAAAATTGGGCGAAGGAGGCTATGGCTCCGTCTTTAAGGGAAAGTTATCAAGTGGATTTTGTGTTGCAATAAAAGTGTTAGGTAAATCAAGAGGTAATGGACATGACTTTATTAGTGAAGTTGTCACCATTGGAAGAATACATCATCAAAATGTAGTACAATTAATTGGATTTTGTGTAGAGGGTTCAAGACGGGCTCTTGTTTATGAATTCATGTCCAATGGGTCTCTTGATAAGATTATTTTTTGTAAAGACAAAAGTAAAGAGTTTGGATATGAAAAAATATATAATATATCAATTGGGGTAGCTCGAGGAATTGCTTATCTCCATCATGGATGTGAGATGCAAATTTTGCATTTTGATATAAAACCCCACAATATTCTACTTGATGATAATTTTATCCCAAAGGTTTCTGATTTTGGAATGGCAAAATTATATCCAATAGATAATAACATTGTCACCATGACAGCAGTAGGAGGAACAATTGGATATATGGCTCCAGAATTGTTTTATAAAAATATTGGGAGAATATCTTATAAGTCTGATGTTTATAGTTTTGGAATGCTTTTAATGGACATGGCAAGCAAGAGGAAAAATTTAAATCCCCATGCTGAGCATTCAAACGAAATTTACTTTCTATCTTGGATTTCTGATCACCTCAAAAAAGGAAAAGATATAGAAATGGAAGATATTACAAAGGAGGAAAAGAAAATAGTAAAAAAGATGTTTATAGTTGCACTTTGGTGTATACAAATGAATCCAATAGATCGTCCTTCTATGAACAAAGTAGTGGAAATACTTGAAAGAGACACTTAA 1758 0.3794 MVMWREIVLLVIFLLFLVQQICARNEQEHAIDCPHYSCGKIANISRPFRLKGDPIYCGDRRYELSCENNVTVLTLYWRKYHVQAINYNNFTIRVVDPGVEEPSCSSLPRHFLSQSNFSDAYHGGIMDPYRATQSQFSEVGPYEKSLFKHIIYLNCSHPVSENYKYVNTTPCVKWESKGYIYAIAGDLTAADFEVGCRIKLVSPTSWWGLEANKSSYTLMHRALVYGFEMPWLHVACAAQCGGNSTYDECYFDSSILQLQCLHYCDDIFGGLLTECDFLSNVWTGLLETIKGNLKSEEVVRNFEPEIKNMVRGFKEKLGEGGYGSVFKGKLSSGFCVAIKVLGKSRGNGHDFISEVVTIGRIHHQNVVQLIGFCVEGSRRALVYEFMSNGSLDKIIFCKDKSKEFGYEKIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDDNFIPKVSDFGMAKLYPIDNNIVTMTAVGGTIGYMAPELFYKNIGRISYKSDVYSFGMLLMDMASKRKNLNPHAEHSNEIYFLSWISDHLKKGKDIEMEDITKEEKKIVKKMFIVALWCIQMNPIDRPSMNKVVEILERDT* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00197 585 FunFam PR5-like receptor kinase 386 585 - -
Lapu8g00197 585 Gene3D Transferase(Phosphotransferase) domain 1 386 585 - -
Lapu8g00197 585 PANTHER RUST RESISTANCE KINASE LR10-RELATED 300 583 IPR045874 GO:0004672
Lapu8g00197 585 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Lapu8g00197 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Lapu8g00197 585 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00197 585 SMART serkin_6 311 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00197 585 Gene3D Phosphorylase Kinase; domain 1 290 385 - -
Lapu8g00197 585 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00197 585 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Lapu8g00197 585 SUPERFAMILY Protein kinase-like (PK-like) 312 581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00197 Lapu-Chr8 12564385 12567949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00197 11 582 Receptor kinase-like Gene Family AT5G38260 33.770 6.58e-100 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00197 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00197 - - gmx:100781099 738.028