Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00196 ATGCTCAATTTTCAGAAACTGTCTCTTCTATTCACGTTGCTGTTTCTGGTTGGGAAGCCTGCAATGGGCAAGAACCACTGCGTCTATAAATGTGGGCACCTTCGTATTCAATTTCCATTTTATCTCAGAAACAAGAACTTGAATCACACCACCAACTACCCCCCTGAGTTTGGTTTGTTCTGCACCCAAAAAGATGAAACTATTCTGGAGCTGCCTTCTATTCCAATACAATTGTTTGTCAGAAAAATTGATTACGAATCTCTGCGAATTGAAATATATGACCCCCAAAATTGCCTTCCCGATCAACTCTTGAAACTCGGCAACGCATCCATCTCTCCATTCGGATTTCGTCGTAAACAGTATGACTTTTCCTTCTTCCGTTGCGACTCATTGTCATGTCCTATTTTGCTACAAGACTCCTACTACGAAGTCATTGACCCCCAATTACTATCCTGCACGAAGCTGAAAGATGTTTCCGTCGACTGGATGTATTCGTATAAGGAGACGATGGTCATGGAATGGTCGAAACCTGACTGTGGATACTGTGAAGCACGAGGCCAAGAATGTAAATGGAAGAATGGTACTAACGGTGGAACTGAATGTTCCATTTGCCGAACAAAAAGGATTTCCACATCGACTGTTGTCTGCATTGCTGCAGGAGGAGTAGTTGGTTTGATGCTTTTGCTGCTACTGATGAAGGCATTGTTTTACGTGTATGACTATTATGAGAAGAGAGGAGAAGACGAGGCTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCTACCAGGTTCACTTACGCTGACATCAAGAGAATCACAAATGGGTTTAGTGAGAGTTTAGGGGAAGGAGCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTCGTGAAATTCTTGTTGCTGTGAAGATACTCAAAGACACAGTGGGAGATGGGAAGGATTTCATAAATGAAGTGAGAGCCATTGGGAAAATTCATCACGTTAACATTGTTCGCTTGCTTGGTTTCTGTGCAGATGAGTTCCACCGTGCTCTTGTCTACGATTTCTTTCCAAATGGGTCGTTGCAGAGATTCTTGGCTTCACCGAACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGGTCTTGGTGTTGGGAGAGGGATTGAGTATCTCCACCTTGGCTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTGCTGGATCACCTTTTAGTCCCCAAAATCACTGATTTTGGACTAGCCAAGTTGTGTCCCAAAAATCAGAGTACGGTGTCAATGACTGCAGCCAGGGGAACTTTGGGGTACATTGCCCCTGAAGTTTTCTCTCGGAACTTCGGTAATGTGTCTTACAAGTCTGACATTTACAGCTATGGAATGTTGCTGTTAGAAATGGTTGGAGGAAGAAGGAATACAAATGTGTCAGTTGAGGACAGTTTCCAAGTGCTGTACCCAGAGTGGATCCATAATTTGGTGGAAGGAAAAGAAGTGGAAATTAGCGTTGAGGATGAGGGAGATGCTAAAATTGCAAAGAAACTGGCCATTGTAGGACTTTGGTGCATTCAATGGAATCCTGCGGACCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGGATGGATATGAGTTAATACCACCCCCTACTCCTTTTGATATCTCTGCTTCTTCAAGAACAAATGCCCTTGTTCCAGCAAGACGTCAAAATTTTGAGTTGGAAGTTATTCATGAAATAGAAGAAGACAATGTCGATCACTTTTAA 1791 0.4283 MLNFQKLSLLFTLLFLVGKPAMGKNHCVYKCGHLRIQFPFYLRNKNLNHTTNYPPEFGLFCTQKDETILELPSIPIQLFVRKIDYESLRIEIYDPQNCLPDQLLKLGNASISPFGFRRKQYDFSFFRCDSLSCPILLQDSYYEVIDPQLLSCTKLKDVSVDWMYSYKETMVMEWSKPDCGYCEARGQECKWKNGTNGGTECSICRTKRISTSTVVCIAAGGVVGLMLLLLLMKALFYVYDYYEKRGEDEARIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSREILVAVKILKDTVGDGKDFINEVRAIGKIHHVNIVRLLGFCADEFHRALVYDFFPNGSLQRFLASPNNKDVFLGWEKLQQIGLGVGRGIEYLHLGCDHRILHFDINPHNVLLDHLLVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRRNTNVSVEDSFQVLYPEWIHNLVEGKEVEISVEDEGDAKIAKKLAIVGLWCIQWNPADRPSMKTVVQMLEGDGYELIPPPTPFDISASSRTNALVPARRQNFELEVIHEIEEDNVDHF* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00196 596 Pfam Protein kinase domain 281 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00196 596 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Lapu8g00196 596 Gene3D Phosphorylase Kinase; domain 1 251 351 - -
Lapu8g00196 596 FunFam serine/threonine-protein kinase PBS1-like 245 351 - -
Lapu8g00196 596 Gene3D Transferase(Phosphotransferase) domain 1 352 552 - -
Lapu8g00196 596 ProSiteProfiles Protein kinase domain profile. 277 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00196 596 PANTHER RUST RESISTANCE KINASE LR10-RELATED 249 566 IPR045874 GO:0004672
Lapu8g00196 596 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Lapu8g00196 596 SUPERFAMILY Protein kinase-like (PK-like) 259 548 IPR011009 -
Lapu8g00196 596 FunFam PR5-like receptor kinase 352 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00196 Lapu-Chr8 12524925 12526835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00196 175 560 Receptor kinase-like Gene Family AT1G66910 41.960 7.94e-98 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00196 Pkinase 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00196 - - var:108338466 960.674