Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00195 ATGAGTGCCTTACTTTCTTGCTCCCGCTGCGCACAGTCAATGGTTGTCTCTGTGATCATCATTCTTGCGCTATTCCACCAAACTTGCAGTGCCAAGGATCGCACATCCTGTCCGTCTTCTTCCTGCGGCGAAATTCGCGACATAAAATATCCATTCCAACTGAAAGGCGACCCTGACGGTTGCGGCCTTCCCGGGTACGAATTTGATTGCGTGAATAACGTGACAGTGCTTACTCTGTTTTCAGGGAAATACCATGTGAAAGAAATCAATTACAGTAGGTACGAAATCCGGGTGATTGATCCGGGTATTGTGGAGGACACTTCTTGCTCTTTTCCTCGCTATTTCTTATCCAGAAGAAATTTCAGAGAATATGATTATAATAAGGATCCGCTGACTATTTGGGGTATGGAGCGGTATGCGTATGAGCCTCCAATATTAGTAGTGTTTCTAAACTGTAGTAACCGAGTGAGTGATGATCCCCAATATGTGGAAGTGAAAGCCGGTGGTTGTGATTCCGGAGGTCATATCTACGCCGTTCTGGATCACTGTATGGAATATACGATATTTACAATGAGGGACATAAAGGTCGGGTGCAGATTAAAGAGTGCTACCTTAGTAAACCGGATACATGGCAAAAATGTTCCCTGTAGAGACTGGAGAGACCGGATAGATGACAAGAACGTTTCCTATGCTGATATCCTGAAATCTCTGGAAGAAGGATTTTGGTTGTCTTGGTTTCGACTTGTTTGTCCGGATCGGTGTGGAAAAGATATCCCTTGCTTCATCAATGATACCACACAACAAATTGAATGCCATACTTGTCAAATGTTCGACTCCTGTACTCGCAATTACGTGTATGAAAACATTGAAACTTTTTTGTTGGACAACAATATAAATCCCATTAGATATGAATATAGAGAAGTCAAGAAAATGACTAAAGGTTTCAAAGAGAAATTAGGTGAAGGAGGTTTTGGTTCTGTATACAAAGGAAAACTTCGAAGTGGGTTAGATGTAGCAGTAAAGATGTTGACCAAATCCGAAAATAATGGACAAGACTTTGTTAATGAAGTAGCTACCATTGGAAGAATACATCATGTGAATATAGTAGGTCTTATTGGATATTGTGTTGAAGGAAAAAAACGTGGACTAATTTATGAATACATGCCTAATGGGTCATTGGATAAATACATTTTCTCTAAAGAAGGAAGTGTTCCTTTAAGTTATGAGAAGATATATGAAATATCTCTTGGAGTTGCTTATGGAATAACATATCTACATAGAGGTTGCGATGTGCAGATTTTACATTTTGATATCAAGCCTCATAATATTCTTTTAGATGATAGTTTTACTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTATATCCTACTAAAGATAGATCCATTATTTTAACCGCAATAAGAGGAACATTGGGCTACATGGCTCCAGAATTATTCTACAAAAATATAGGCGGAGTTTCTTATAAAGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAATAGAAGGAAAAACTCAGATCCTCATGCAGAACATTCAAGCCAAAATTATTTACCCTTTTGGATTCATGATCAATTTAGAGAAGAGAAAGATATTATCATGGAAGGTGCTTCAGAGATGGATAAGATTCTAATGAAAAAGATGTTTATAGTTGCACTTTGGTGTATACAATTGAAGCCAAGTGATCGTCCATCAATGAGCAAAGTTGTAAAGATGCTTGAAGGAAAAGTTGAAAGTATTGAAATTCCTCCCAAACCATCTTTTTATCCTCATGCAATGTTAGAACAAGATGGTAAAATAAACTCTGATGAAACATGGAGTGGTTCAAGTAGTTCTAATGTGAATGTTGACAAAAACATCCCTAATCATTCATCTTTGGAATAA 1914 0.3788 MSALLSCSRCAQSMVVSVIIILALFHQTCSAKDRTSCPSSSCGEIRDIKYPFQLKGDPDGCGLPGYEFDCVNNVTVLTLFSGKYHVKEINYSRYEIRVIDPGIVEDTSCSFPRYFLSRRNFREYDYNKDPLTIWGMERYAYEPPILVVFLNCSNRVSDDPQYVEVKAGGCDSGGHIYAVLDHCMEYTIFTMRDIKVGCRLKSATLVNRIHGKNVPCRDWRDRIDDKNVSYADILKSLEEGFWLSWFRLVCPDRCGKDIPCFINDTTQQIECHTCQMFDSCTRNYVYENIETFLLDNNINPIRYEYREVKKMTKGFKEKLGEGGFGSVYKGKLRSGLDVAVKMLTKSENNGQDFVNEVATIGRIHHVNIVGLIGYCVEGKKRGLIYEYMPNGSLDKYIFSKEGSVPLSYEKIYEISLGVAYGITYLHRGCDVQILHFDIKPHNILLDDSFTPKVSDFGLAKLYPTKDRSIILTAIRGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMANRRKNSDPHAEHSSQNYLPFWIHDQFREEKDIIMEGASEMDKILMKKMFIVALWCIQLKPSDRPSMSKVVKMLEGKVESIEIPPKPSFYPHAMLEQDGKINSDETWSGSSSSNVNVDKNIPNHSSLE* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00195 637 SUPERFAMILY Protein kinase-like (PK-like) 298 584 IPR011009 -
Lapu8g00195 637 FunFam PR5-like receptor kinase 388 595 - -
Lapu8g00195 637 CDD STKc_IRAK 319 585 - -
Lapu8g00195 637 ProSiteProfiles Protein kinase domain profile. 313 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00195 637 Gene3D Phosphorylase Kinase; domain 1 293 387 - -
Lapu8g00195 637 Gene3D Transferase(Phosphotransferase) domain 1 388 592 - -
Lapu8g00195 637 FunFam serine/threonine-protein kinase PBS1-like 283 387 - -
Lapu8g00195 637 SMART serkin_6 313 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00195 637 PANTHER RUST RESISTANCE KINASE LR10-RELATED 286 603 IPR045874 GO:0004672
Lapu8g00195 637 Pfam Protein kinase domain 316 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00195 637 MobiDBLite consensus disorder prediction 609 637 - -
Lapu8g00195 637 MobiDBLite consensus disorder prediction 610 637 - -
Lapu8g00195 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Lapu8g00195 637 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Lapu8g00195 637 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00195 Lapu-Chr8 12488699 12499614 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00195 12 621 Receptor kinase-like Gene Family AT5G38260 33.687 1.79e-105 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00195 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00195 - - pvu:PHAVU_011G197500g 783.097