Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00192 ATGACTAAAGGTTTCCAAGTGAAATTAGGTCAAGGAGGTTTTGGTTCTGTATATAAAGGAAAGCTTCAAAGTGGATTAGATGTAGCAGTAAAGATGTTGACCAAATCCGAAGATAATGGACAAGACTTTGTTAATGAAGTAGGTACCATTGGAAGAATACATCATGTGAATGTAGTTGGTCTTATTGGATATTGTGTTGAAGGTAAAAAACGTGGATTAATTTATGAATACATGCCTAATGGGTCATTGGATAAATACATTTTCTCTAAAGGAGGAAGCATTCCTTTAAGTTATGAGAAAATATATGAAATATCTCTTGGAATTGCTCATGGGATAGCGTATCTACATCGAGGTTGTGATGTACAGATTTTACATTTCGATATCAAACCTCACAATATTCTTTTAGATGATAGCTTTACTCCAAAGATTTCAGATTTTGGACTTGCAAAGTTATATCCTACAAAAGATGGATCCATTATTTTAACTGGAATAAGAGGAACGTTGGGTTACATGGCTCCAGAATTATTCTATAAAAATATAGGTGGAGTTTCTTACAAAGCAGACATCTACAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAAAAACTCAGATCCTCATGCAGAGCATTCAAGCCAACATTATTTACCCTTTTGGATCCATGATCAATTTAAAGAAGAGAAAGATATTGACATGGAAGGTGCTTCAGAAATGGATAAGATTTTAATGAAGAAAATGTTCATAGTTGCACTCTGGTGTATTCAATTAAAACCAAGTGATCGTCCATCAATGAAAAAGGTTGTAGAGATGCTTGAAGGAAAAGTTGAAAGTCTTGAAATTCCTCCTAAACCTTCTTTTTATCCGAATGAAATGTTAGAACATGATGGTACAATCAACTCTGACGAAATATCATGGAGTGATTCAGCTGATTCTAATGTAAATGTTGACAAAAACATGCCTAATTACTCATCTTTAGAATAA 987 0.3354 MTKGFQVKLGQGGFGSVYKGKLQSGLDVAVKMLTKSEDNGQDFVNEVGTIGRIHHVNVVGLIGYCVEGKKRGLIYEYMPNGSLDKYIFSKGGSIPLSYEKIYEISLGIAHGIAYLHRGCDVQILHFDIKPHNILLDDSFTPKISDFGLAKLYPTKDGSIILTGIRGTLGYMAPELFYKNIGGVSYKADIYSFGMLLMEMASKRKNSDPHAEHSSQHYLPFWIHDQFKEEKDIDMEGASEMDKILMKKMFIVALWCIQLKPSDRPSMKKVVEMLEGKVESLEIPPKPSFYPNEMLEHDGTINSDEISWSDSADSNVNVDKNMPNYSSLE* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00192 328 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00192 328 FunFam PR5-like receptor kinase 78 285 - -
Lapu8g00192 328 MobiDBLite consensus disorder prediction 300 328 - -
Lapu8g00192 328 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 293 IPR045874 GO:0004672
Lapu8g00192 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lapu8g00192 328 Gene3D Transferase(Phosphotransferase) domain 1 79 282 - -
Lapu8g00192 328 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Lapu8g00192 328 CDD STKc_IRAK 9 275 - -
Lapu8g00192 328 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
Lapu8g00192 328 PIRSF ILK 4 282 - -
Lapu8g00192 328 MobiDBLite consensus disorder prediction 301 328 - -
Lapu8g00192 328 ProSiteProfiles Protein kinase domain profile. 3 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00192 328 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Lapu8g00192 328 Pfam Protein kinase domain 7 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00192 Lapu-Chr8 12451441 12452511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00192 1 306 Receptor kinase-like Gene Family AT5G38280 48.875 2.22e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu8g00192 Pkinase 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00192 - - var:108336466 553.518