Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00190 ATGAATCAAAACCAGCTTCAGCCCCTGCCTCTGCTTAGTAGCTTCCTAGGTTCATCTCCCCAAGAAGCTTTGCTACAAAACCAAAACCCTAAGCCATACCATGCTCAAGTTGAGGATGTCACTGTAGCCTTACACATAGGCCTCCCCAACAATTCAAGTGGCTCCACCAATAATCATGCCTTTGTGAATGCCACAACTCATGTTCCTAGCAACTACTGGATACCAACTCAAGAACAGATCCTCATTGGGTTTAGCCATTTCTCTTGTCCCGTCTGCCTCAAAACCTTCAATCGCTACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGCAGAGGACCAGACTCGCTGAAGCGAACCCATCCACGACCATTGTTGGACATTCCCTGCTACTGTTGCTCGAGAGGGTGCAAGAACAACATCGAGCACCCACGTGCGAAGCCTCTGAAGGACTTCCGCACGCTTCAGACGCACTTCAAGAGGAAGCATGGCGCCAAGCCCTTCACGTGCCGCAAGTGCGCCAAGCCTTTGGCCGTCAAAGGTGACTGGAGAACCCACGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCCCTCAAAGACCACATCAAAGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG 699 0.5064 MNQNQLQPLPLLSSFLGSSPQEALLQNQNPKPYHAQVEDVTVALHIGLPNNSSGSTNNHAFVNATTHVPSNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHFKRKHGAKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFTSSSDAM* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00190 232 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Lapu8g00190 232 PANTHER ZINC FINGER PROTEIN WIP2 9 226 IPR043584 GO:0003700|GO:0010468
Lapu8g00190 232 FunFam Zinc finger protein WIP2 140 222 - -
Lapu8g00190 232 Gene3D Classic Zinc Finger 148 221 - -
Lapu8g00190 232 SUPERFAMILY beta-beta-alpha zinc fingers 82 109 IPR036236 -
Lapu8g00190 232 Gene3D Classic Zinc Finger 86 109 - -
Lapu8g00190 232 FunFam zinc finger protein WIP2-like 86 109 - -
Lapu8g00190 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00190 Lapu-Chr8 12358323 12359448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00190 1 228 C2H2 Transcription Factor Family AT1G34790 57.600 1.36e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu8g00190 zf-C2H2_6 6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00190 - - var:108336851 459.914