Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00188 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTTGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAATACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATGCAAACCCGGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCGAGAGGAAGAGGTACATTTCAAGGAGGAGCACCAGGAACAGCTTCATACAGTGGTGTGCCGGCGGCAGGACCGCCGGCACTAGCACCGCCGCCGCCGCCTCCACCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACAATGTATAACCCACAAATTCAGCAACCACAATACTACCAACAGCTCTATGGACCATCATCCTCCACCATGGGTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAGGTACCTTTTCTACACCCCAACCTCATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAATGGAAGGCTCATTTTCTGCATATCGTCCACCACCTCAATTGCAACAACTTCCAATAAGGCAACCCCCTCCTTCCCCTAGTGACTCACAGACTCAGCAACGTACCTCGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGAACTGA 831 0.4934 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADANPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPAAGPPALAPPPPPPPPPPLVYPPYGYPTYTPDYGYHQATMYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRGTFSTPQPHRIPAGPSYLYYPTPMEGSFSAYRPPPQLQQLPIRQPPPSPSDSQTQQRTSSEAAGGVVITSESSNTQGRN* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00188 276 PANTHER BOULE-RELATED 6 254 - -
Lapu8g00188 276 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Lapu8g00188 276 SUPERFAMILY RNA-binding domain, RBD 9 117 IPR035979 GO:0003676
Lapu8g00188 276 MobiDBLite consensus disorder prediction 90 140 - -
Lapu8g00188 276 MobiDBLite consensus disorder prediction 246 276 - -
Lapu8g00188 276 Gene3D - 3 111 IPR012677 -
Lapu8g00188 276 MobiDBLite consensus disorder prediction 124 140 - -
Lapu8g00188 276 MobiDBLite consensus disorder prediction 224 276 - -
Lapu8g00188 276 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lapu8g00188 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 78 IPR000504 GO:0003723
Lapu8g00188 276 CDD RRM_RBM24_RBM38_like 16 91 - -
Lapu8g00188 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00188 Lapu-Chr8 12326157 12331809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00188 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 1.17e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00188 K25006 - gmx:100787086 400.208