Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00175 ATGGGCATCCACATGGAATGCCCTGCACCTCCAACTGCACCGCTGTTCATGAATCTGGATCATGATCGTGCATGTGTTTGCATTCTTATCCTCCTTCTCGTGCCGCCGGTTACGGCACAGTTTCAAAACCCGCCGCCGTCACCGCCGCAGTCGGATCCATTCACGAGGCTGAGGTTTGACAAGACCATGGCCGCAGTTCTCGTGATCCTCGTCGTGGTCTTCTTCGCGTTGGGATTCGTGTCCATCTACACTCGCCAATGCGCGGAGCGGCGGATCAGGGGGAGGCTCGACCTGGCCGTGGCGATCGCCGGCGGGATGGAGCGGCGGCAGCACCACGGACTCGACCCAGCGATCGTGGACACGTTCCCCACGTTCGTGTACTCCGAGGTTAAAGCCCTGAAGATCGGGAGGGCCACGCTGGAATGCGCTGTGTGTCTCAACGAGTTCCGCGACGACGAAACACTGCGTTTGATACCCAAATGCTGCCACGTGTTCCACCCCGATTGCATCGATGCGTGGTTGGTGAATCACTCCACTTGTCCCGTTTGCCGCGCCAACCTCGCGCCCAAGCCCGAGGACGCACCTCCTCCCGTTGAGATTCACATTCCGGATCCAGCCCGGCCCAATGGGCCCAACGCAGAGCCCGATTATGATCCCAATAATATCAACCCGGTTGATGAAGGTGAAAGTGAACGAAACAGAATAGTTACGGAGCCTCTTAGTTTAGATGACCCGAACAGGGTCCGTCCGGTTCGGTCCAGATCGACCGGTTTTGCAATTACAAGGCTGTTTCCGCGCTCTCACTCAACGGGCCACTTTCTGGTTCGACCGGGAGAGGACTGCGAGCGGTTCACACTGAGGTTGCCAGAGGATGTGAGGAACCGGCTGATGAGTTCTGGGACGCTGAACCGGACCAAGAGTTGTGTGGTGACGTGGCAGCGCCAGAGTAGTGGAAGGAGGGATTACAGAACGAGGAGTGTGGGCAGAAGCTATCTGCAATACGAGCGGTTCGGTGGGGAAGGGCGGTTGGACCGGTGGGGGTTCATGTGGACCCCGCCTTTTTGGGGTAGAACCGGTTCGGTGAGATCACCAAAGTCAACGAGGATGAAGGATGAAGTGGACGCGGGAGAACGTTCCTGTGATCGTTTATTTTCCAAGGATTGA 1164 0.5756 MGIHMECPAPPTAPLFMNLDHDRACVCILILLLVPPVTAQFQNPPPSPPQSDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMERRQHHGLDPAIVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPPPVEIHIPDPARPNGPNAEPDYDPNNINPVDEGESERNRIVTEPLSLDDPNRVRPVRSRSTGFAITRLFPRSHSTGHFLVRPGEDCERFTLRLPEDVRNRLMSSGTLNRTKSCVVTWQRQSSGRRDYRTRSVGRSYLQYERFGGEGRLDRWGFMWTPPFWGRTGSVRSPKSTRMKDEVDAGERSCDRLFSKD* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00175 387 FunFam E3 ubiquitin-protein ligase ATL6 102 190 - -
Lapu8g00175 387 MobiDBLite consensus disorder prediction 360 387 - -
Lapu8g00175 387 SMART ring_2 142 183 IPR001841 -
Lapu8g00175 387 PANTHER RING FINGER DOMAIN-CONTAINING 37 190 - -
Lapu8g00175 387 MobiDBLite consensus disorder prediction 364 387 - -
Lapu8g00175 387 Pfam Ring finger domain 141 184 IPR001841 -
Lapu8g00175 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 190 IPR013083 -
Lapu8g00175 387 MobiDBLite consensus disorder prediction 193 232 - -
Lapu8g00175 387 SUPERFAMILY RING/U-box 124 198 - -
Lapu8g00175 387 CDD RING-H2_EL5-like 141 184 - -
Lapu8g00175 387 MobiDBLite consensus disorder prediction 193 212 - -
Lapu8g00175 387 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00175 Lapu-Chr8 11793254 11794417 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00175 28 378 Rapid Response to Elicitors AT3G05200 41.711 1.14e-70 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00175 K10664 - gmx:100815982 600.897