Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00173 ATGTCGCCGCCAGTAACCGGTCAACCGGTAACTCCAACGATAGAACCCGACAGCAACAAATCCGTGATCACCATCATGGTCATCATCGCCATAATGTTCCTCATCTCAGCCTTCATCTCTCTCTACTCTCGCAAATGCTCCGACCGACAAGCGCAGACACGTGGCATTCTCGACCTCGCCGCATCCACCGGCGCAACCGGTAACCCCTCATCGCAAAGCGAAGCCAACGGTCTCAGCCAAGTCACCATAGAAACCTTCCCTACATTCCTCTATTCCGACGTGAAGGGCTTCAAAATCGGAAAAGACACGCTAGCATGCGCTGTGTGCTTGAACGAGTTCCACGACGACGAAACCCTTCGCGTGATCCCCAAATGCTGCCACGTGTACCACCCCAATTGCATCGACGTTTGGTTATCTTCTCACTCCACTTGTCCAGTGTGTCGCGCCAACCTCGTTCCGCAGCCTGAAGACATAAACATGAACACCAACATGCTACCAATGTTGTCCATTCAGGTAGCCGATGAAGATGAAGATGAAAGTGGTGAGCATGAACACGAGAGTGTTATTAGTGAGGAGGAGAAAAGAGACGTTGCATCAGAGTCGTCCATCACGGTCGAGATCAACTGGGTTCTTGTCCTCTCTCTTGTTTCCGCGATCGAACTCAATGGGGCAATTGGCGCAGCCAGGGGAGAACTATGA 699 0.5193 MSPPVTGQPVTPTIEPDSNKSVITIMVIIAIMFLISAFISLYSRKCSDRQAQTRGILDLAASTGATGNPSSQSEANGLSQVTIETFPTFLYSDVKGFKIGKDTLACAVCLNEFHDDETLRVIPKCCHVYHPNCIDVWLSSHSTCPVCRANLVPQPEDINMNTNMLPMLSIQVADEDEDESGEHEHESVISEEEKRDVASESSITVEINWVLVLSLVSAIELNGAIGAARGEL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00173 232 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lapu8g00173 232 Pfam Ring finger domain 105 148 IPR001841 -
Lapu8g00173 232 PANTHER RING FINGER DOMAIN-CONTAINING 11 159 - -
Lapu8g00173 232 CDD RING-H2_EL5-like 106 148 - -
Lapu8g00173 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 154 IPR013083 -
Lapu8g00173 232 SMART ring_2 106 147 IPR001841 -
Lapu8g00173 232 MobiDBLite consensus disorder prediction 174 195 - -
Lapu8g00173 232 FunFam E3 ubiquitin-protein ligase ATL6 67 154 - -
Lapu8g00173 232 SUPERFAMILY RING/U-box 105 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00173 Lapu-Chr8 11724370 11725564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00173 21 154 Rapid Response to Elicitors AT3G05200 52.206 6.32e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00173 K10664 - gmx:100814384 287.345