Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00172 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACGCTTGCAACAAAGACTACTTCTATTCGCTAATAGAAAACAATTTCCAAGAAGCAGAAAACAAAGCCCTTCTGGGAATCATCAGCAATAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCAGCTTTGCAAAATGTCAAGGACCAATGGGACTCACACTCCTCTCCTGAACCCTGCACCGTCGATCAATCCCTCCCCGGCGCTTTTCCTCCTCCTCCTCCCTCCTCCACCGAAGCCACCACCAGCCGCCGCAAACGCCGCCGCACTAAGAGCACCAAGAACAAGGAGGAGATCGAGAATCAAAGGATGACCCACATTGCAGTTGAACGCAATCGAAGGAAACAGATGAACGAATACCTCGCTGTTTTAAGATCCTTGATGCCACCCTCTTATGTTCAAAGGGGTGATCAAGCATCTATTATTGGTGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGGCAGAAGAGAACTAAGGAAAACGGTGGTGGCTTCTCTGACTCATCACCCTTAGCCGAGTTCTTCATGTTCCCTCAGTACTCGACACGTGCGACACAGAACAGCAGAGGCTACCCTGGCATGTGCGAAGCACGGAACCATTCATGGGCCGTGGCAGACATAGAGGTGACCCTGGTGGATGGCCATGCCAACATAAAGATACTCTCCAAGAAACAACCAGGCTTGCTTCTGAAGATGGTTGTTGGCCTTCAAACTCTTGCCTTCACCATTCTCCACCTTAATGTGACAACTGTTGACGATATGGTCCTTACCTCAGTTAGTGTTAAGATAGAGGAAGGGTGTCAGGTGAACACAGTGGACGAAATTGCAGGTGCTGTGCATGAATTATCCCGCACGATCCAGGAGGAAGCTGTTTTGAGCTGA 957 0.4953 MALEAVVFPQDPFTYACNKDYFYSLIENNFQEAENKALLGIISNNIDHTLHANWDSSSPSALQNVKDQWDSHSSPEPCTVDQSLPGAFPPPPPSSTEATTSRRKRRRTKSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQKRTKENGGGFSDSSPLAEFFMFPQYSTRATQNSRGYPGMCEARNHSWAVADIEVTLVDGHANIKILSKKQPGLLLKMVVGLQTLAFTILHLNVTTVDDMVLTSVSVKIEEGCQVNTVDEIAGAVHELSRTIQEEAVLS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00172 318 PANTHER MAX DIMERIZATION, MAD 68 315 - -
Lapu8g00172 318 FunFam Basic helix-loop-helix transcription factor 110 185 - -
Lapu8g00172 318 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Lapu8g00172 318 MobiDBLite consensus disorder prediction 57 80 - -
Lapu8g00172 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 183 IPR036638 GO:0046983
Lapu8g00172 318 CDD bHLH_AtFAMA_like 122 195 - -
Lapu8g00172 318 Gene3D - 102 186 IPR036638 GO:0046983
Lapu8g00172 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Lapu8g00172 318 MobiDBLite consensus disorder prediction 57 118 - -
Lapu8g00172 318 SMART finulus 125 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00172 Lapu-Chr8 11680351 11681869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00172 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.000 1.83e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g00172 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00172 - - gmx:100797856 495.352