Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00171 ATGGCCAACAAACTCAGAAAACTCTTCCCAGATGAAACAACAACCACAAACCAAACCCAAACACAAGATTGCTATGGCTTATGTGACCCTGCATGCCCTTACAACTGTTACTCTAACCAAGACTACTTCTTCTCTCCACCACCACCATCTATTTCACACTCAACACAAATTAACCACATATCCTCCTATTTGATCATCCTCGGGACTCTCTTCACGGTCATTTTTGTTGTCATTGGTTTCTACGTGATCAAAGTGAAGTGCTACGCTGCATGGTGCGGCTGGAGGCTCAACGGATCCGTTCCTTCTCAATCAGACACCACCACTGAGGAGTTTCTCAATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAGCAATCCGTCATAAACTCCATCACGGTATGCAAGTACAAAAGGAACGAAGGGTTGGTTGAAGGAACTGAGTGTTCGGTGTGTCTGAACGAGTTCCAAGAGGAAGAGACCTTGAGACTTTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGCATTGACACTTGGTTGAGATCACACACCAATTGTCCTCTTTGTCGTGCCGGTATTGTCTCTAGCAGTGTCACTTCTGAAGCACCCGTGTTGAATTTGGAGCAAGAGAATGCAAATTTGGGAAGAAATCAAGAGACCCTTATGGAGAATTCAATGAATGAAGGCTTGTTAAGCAACAACATGGTTGCAGGGGAATCAAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCTAAGGATCGGGTGCATGATCAAACACAGATCCATCACGTTCTGGATATTGAGATTCAAACAGAAATGGGGTCTGTTTCAACTACAGAATCTGAAAGCCATCATGTTGGTGATGATCATAAACATGATAAAACACACTTGCAAGATGTTAATCTACGGAAGCAAGAGCAGGATGGTGATTACTACCCAAAAACGTGTAAAACGATGCGTCGTTGTTCTTCTATTGAAGAGTGTTTGCATTTAAGCCCGGTATCCATGAAAAGATCATTCTCCTGCAATGGAAGGATTCTAACTTCGAGAGGTTGCATGACTCTAAACTCTAGGCTCCATTCATCCCTACTAGAATTTTCAATCTGTTAG 1131 0.4368 MANKLRKLFPDETTTTNQTQTQDCYGLCDPACPYNCYSNQDYFFSPPPPSISHSTQINHISSYLIILGTLFTVIFVVIGFYVIKVKCYAAWCGWRLNGSVPSQSDTTTEEFLNENQVDHPVWLIATVGLQQSVINSITVCKYKRNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSSSVTSEAPVLNLEQENANLGRNQETLMENSMNEGLLSNNMVAGESSEALELVDESNSKDRVHDQTQIHHVLDIEIQTEMGSVSTTESESHHVGDDHKHDKTHLQDVNLRKQEQDGDYYPKTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRILTSRGCMTLNSRLHSSLLEFSIC* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00171 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Lapu8g00171 376 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Lapu8g00171 376 FunFam RING-H2 finger protein ATL54 129 202 - -
Lapu8g00171 376 Pfam Ring finger domain 153 196 IPR001841 -
Lapu8g00171 376 Coils Coil 210 230 - -
Lapu8g00171 376 CDD RING-H2_EL5-like 153 196 - -
Lapu8g00171 376 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 53 202 IPR044675 -
Lapu8g00171 376 SMART ring_2 154 195 IPR001841 -
Lapu8g00171 376 SUPERFAMILY RING/U-box 145 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00171 Lapu-Chr8 11659020 11660150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00171 4 206 C3H Transcription Factor Family AT1G72220 48.511 1.07e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00171 - - gmx:100805705 587.03