Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00158 ATGGAATTCGACGAGCAGGAGGAGCAGGAGGAGGAAATGGGGATGCCAGAGCCGCCAGTGCCCGCGCCGGTGCAAAGTTACGACTCGCTTGGGAACTCGGCGGCGCGGTCCAAGGTCGGCGGCGAGGGGCGGAAGGGCGCGTTCGGCGCCGGGACGGTACGCTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCCGTCGATGGCTGCTGCGAGTTCATGCCTGCCGGCGAGGACGGCACGCTGGAGGCCGTGATTTGTGCCGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGAGAGATGACCTCCTTCCACCACCGCGCGCAACCACCGCCGCCGCTGCACCACCACCACCAATTCTCCCCCTACTACCATCACCGGGTCCCGCAGCACCCCGCCGCCGCCGGGTACCTCCACCACCACCTCGCCACGCCTCCCATGGCACAGCACCGCCCTCTCGCCCTCCCGGCAGCCGCCTCTGGCGGCGGTCTCAGCCGCGAAGACGAAGACATATCGAATCCGAGCAGCAGCGGCGGTGGCGGCGGCGGGGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCAGAACAGCTAGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTAGAACAGTTCTGTGCTGAGACCAATGTGGAGCGAAAAGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGTGATTAGTTTGTCTGTAAAGAGATGGAGACCGAATAAAGACAAGGTAGCGAAGTGA 816 0.6152 MEFDEQEEQEEEMGMPEPPVPAPVQSYDSLGNSAARSKVGGEGRKGAFGAGTVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPAAAGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLVISLSVKRWRPNKDKVAK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00158 271 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Lapu8g00158 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Lapu8g00158 271 FunFam Zinc-finger homeodomain protein 2 181 254 - -
Lapu8g00158 271 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Lapu8g00158 271 Gene3D - 179 255 - -
Lapu8g00158 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 253 - -
Lapu8g00158 271 SUPERFAMILY Homeodomain-like 180 252 IPR009057 -
Lapu8g00158 271 MobiDBLite consensus disorder prediction 1 41 - -
Lapu8g00158 271 MobiDBLite consensus disorder prediction 165 196 - -
Lapu8g00158 271 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00158 Lapu-Chr8 11112147 11114434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00158 1 262 ZF-HD Transcription Factor Family AT4G24660 52.290 1.05e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu8g00158 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00158 - - gmx:100776421 394.815