Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00140 ATGGAGCCACCTGCAATGTACGGACATTCCCAGCCCCTGAACATGCCCCCGCAGATCTCCGGCGCCGAAAGCGACGACGGCACCGGCCCAGACCCCGCCCTTGACGCCCACCACCACATTCACTACGAAACTCACGCGCTCGAAGACGCTGCCGCCGGTGGCGTAGTCGTCGTGGAGGATGTCACCTCCGATGCGGTCTACGTCTCCGGCGGTGGAGGGCCCGAAGAGTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTGTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTGTCTTCGAGTGGTTCGCCATGTGTAGATGCGGTGCCTCAACAGAATCAGAGGGGTTCTATGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCCTCGTTGGATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTTGACAAAAAAGTGAGATATAGTGTACGGCAAGAAGTTGCGCTCAGGATGCACCGCAATAAGGGTCAATTCACTTCTTCTAAGAAACAAGAAGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTCATGCACACATTGTGGCATTAGTTCGAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCCAAGAGAAATCATGAACACTCTCTTGCACTAGTTGAGCAGGTTGATGAAGGTAACGACTCAGATTGTCGGACAGCCGCCAACCCTGCTCGTAACAATCTCGCTGCATACTCAGAGCATGATAATCCAGCTTTGGTAGCTGATCGTAAAGTTTTCCAGTCTCGGAAAATGCTGGAGTAG 930 0.5204 MEPPAMYGHSQPLNMPPQISGAESDDGTGPDPALDAHHHIHYETHALEDAAAGGVVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDAVPQQNQRGSMEYPARCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQEGANSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHSLALVEQVDEGNDSDCRTAANPARNNLAAYSEHDNPALVADRKVFQSRKMLE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00140 309 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Lapu8g00140 309 Pfam GATA zinc finger 210 245 IPR000679 GO:0006355|GO:0043565
Lapu8g00140 309 Gene3D - 200 259 IPR013088 GO:0006355|GO:0008270
Lapu8g00140 309 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Lapu8g00140 309 MobiDBLite consensus disorder prediction 175 227 - -
Lapu8g00140 309 MobiDBLite consensus disorder prediction 1 34 - -
Lapu8g00140 309 Pfam CCT motif 142 184 IPR010402 GO:0005515
Lapu8g00140 309 PANTHER GATA TRANSCRIPTION FACTOR 28 10 279 IPR045280 GO:0006355
Lapu8g00140 309 Pfam tify domain 74 107 IPR010399 -
Lapu8g00140 309 ProSiteProfiles GATA-type zinc finger domain profile. 204 264 IPR000679 GO:0006355|GO:0043565
Lapu8g00140 309 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Lapu8g00140 309 CDD ZnF_GATA 209 254 IPR000679 GO:0006355|GO:0043565
Lapu8g00140 309 MobiDBLite consensus disorder prediction 183 223 - -
Lapu8g00140 309 ProSiteProfiles CCT domain profile. 142 184 IPR010402 GO:0005515
Lapu8g00140 309 SMART tify_2 73 108 IPR010399 -
Lapu8g00140 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00140 Lapu-Chr8 10416360 10421769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00140 74 298 Tify Gene Family AT4G24470 58.996 1.45e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu8g00140 CCT 2.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00140 - - pvu:PHAVU_008G182900g 575.859