Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00133 ATGTGGAAGATGATGAAGTGGTTATGGACAATGGCATCGTGCAAGTGTATTTATCCAACCCTGGTGGATTTGTTACTAGAATTCAGTATAATGGCATTGATAATCTGCTTGAAACTCGTAACGAAAATGGAGACAGAGGGTACTGGGACGTTGTTTGGAGTGAAGCTGGAAGTACAGGAACAACTGGGACATTTGAACGGATTCTACTCCTATGCCATCTTTGAACACTTACCTGAGTGGTCTGCTTTTAACATACCTCAAATAAGGACTGTTTACAAGCTTAGCAAAGACAAGTTTCATTACATGGTGGTGTCAGATAATAGACAAAGATTTATGCCTCTCCCTGATGATAGATTACCTGGAAGAGGAGAAGAACTTGTTCCACCAGAAGCAGTTTTGCTCGTTAATCCTTTGGAGTCAGAGTTTAAGGGAGAGGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTAAGGTTCATGGGTGGATAACTTCTCAATTTCAAACTGATCCATTTATAGGGTTTTGGGTAATCATACCCAGCAATGAGTTTCGATCAGGTGGGCCTGTAAAACAGAATCTCACTTCCCATGTGGGCCCAATAAGCCTAGCTATGTTTCTGAGTGCTCATTACGCAGGAGAAGATATAGTTCTGAAACTCCAACCTAACGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTTAACACTTTATTAGATGGTGATGACCCACTATTGCTATGGGAAGATGCTAAATATAAGACGAACGCAGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCTGAAGATTTTCAGAAGTCTAGCCAACGGGGCAGTGTCTGTGGCACATTACTGGTCCAAGACAGGTTTTTAAGTGATGAGTACATAATAGCAGAAGGTGCTTATATAGGACTGGCACCACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGTTACCAATTTTGGACCACAGCAAACGACAAAGGGTACTTCTCAATCACCAATATACACAGTGGGGATTACAATCTCTATGCATGGGTTCCTGGTTTCATTGGAGAGTATTGTAGCAATATTGTCCTCACCATAACACCAGGTTGTAAAATAGAGGTTGGTGACATTGTTTATGAGGCTCCAAGGGATGGACCAACATTATGGGAGATAGGGATTCCAGATCGTTCTGCAGCTGAATTCTATGTTCCTGATCCGAATCAGAAGTACATCAACAAGCTTTATGTTGATCATCCAGACAAGTATAGGCAATATGGGCTGTGGGAAAGGTATGCAGAACTATATCCAAATGAAGATTTAATTTACACAGTGGGTGTAAGTGACTACAGAAAAGATTGTTTTTTTGCACAGGTCACAAGGAAGAGAGAAGATGACAGTTACCAAGGAACTACATGGCAAACTAAGTTCAACCTTGATGATACAGTGGCAAGTAAAATCTACAAATTGCGGTTGGCACTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCAAACCAAGATCCTCCTATGTTCACTACAGGGAATTTTGGGAAGGACTTTGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATCGATGTGCCAGGTCTTCTGCTAGAGAAAGGTGTTAACACTGTGTTTTTAACACAAACTATGGCTATTGGTCCCTTGGCTCGATTTCAGGGTATAATGTATGACTATATACGCCTAGAAGGTCCTAACCCTTCTTCTCCCATAAAAGAACATTAG 1782 0.413 MWKMMKWLWTMASCKCIYPTLVDLLLEFSIMALIICLKLVTKMETEGTGTLFGVKLEVQEQLGHLNGFYSYAIFEHLPEWSAFNIPQIRTVYKLSKDKFHYMVVSDNRQRFMPLPDDRLPGRGEELVPPEAVLLVNPLESEFKGEVDDKYQYSSENKDLKVHGWITSQFQTDPFIGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDPLLLWEDAKYKTNAEVQSWPYDFPASEDFQKSSQRGSVCGTLLVQDRFLSDEYIIAEGAYIGLAPPGEAGSWQRECKGYQFWTTANDKGYFSITNIHSGDYNLYAWVPGFIGEYCSNIVLTITPGCKIEVGDIVYEAPRDGPTLWEIGIPDRSAAEFYVPDPNQKYINKLYVDHPDKYRQYGLWERYAELYPNEDLIYTVGVSDYRKDCFFAQVTRKREDDSYQGTTWQTKFNLDDTVASKIYKLRLALASANVSELQVRVNDPNQDPPMFTTGNFGKDFAIARHGIHGLYWLFNIDVPGLLLEKGVNTVFLTQTMAIGPLARFQGIMYDYIRLEGPNPSSPIKEH* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00133 593 FunFam Rhamnogalacturonate lyase B 278 377 - -
Lapu8g00133 593 Pfam Rhamnogalacturonate lyase family 65 146 IPR010325 -
Lapu8g00133 593 SUPERFAMILY Starch-binding domain-like 280 376 IPR013784 GO:0030246
Lapu8g00133 593 CDD RGL4_M 281 380 IPR029413 -
Lapu8g00133 593 Pfam Polysaccharide lyase family 4, domain II 304 376 IPR029413 -
Lapu8g00133 593 Pfam Polysaccharide lyase family 4, domain III 390 581 IPR029411 -
Lapu8g00133 593 Gene3D - 388 582 - -
Lapu8g00133 593 Gene3D - 65 221 IPR014718 GO:0030246
Lapu8g00133 593 SUPERFAMILY Galactose-binding domain-like 387 582 IPR008979 -
Lapu8g00133 593 CDD RGL4_N 65 241 - -
Lapu8g00133 593 CDD RGL4_C 392 582 - -
Lapu8g00133 593 Gene3D - 278 375 - -
Lapu8g00133 593 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 65 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00133 Lapu-Chr8 10292159 10318983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00133 65 584 Polysaccharide Lyase AT4G24430 66.922 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00133 K18195 - gmx:100815677 931.784