Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00131 ATGGGGAGAGGAAAGATAGTGATAAGGAGGATCGATAATTCCACGAGTAGGCAAGTCACGTTCTCGAAGCGAAGAAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTTGGAGTTATGATTTTCTCCAGCACCGGAAAACTCTACGATTTCGCTAGCTCCAGCATGAAATCAGTAATTGACCGTTACAACAAATCAAAAGAAGAAAATTGTCAACTGGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGCAAAATGATGGGGGAAGAACTGTCAGGTTTGACGGTCAAAGAATTACAAAATTTGGAGAACCAACTAGAAATTAGCCTTCGTGGTGTCCGTATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAACTAAACCGAAAGGGAAACCTCATACGCCAAGAAAATTTGGAACTGTATAAGAAGGTCTATGGAACAAAAGATGATAGCGAAACAAACAGAAATTCTGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCCGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGCACCTTCAGCAACTGCAAAATTGGGGTATGATTTTTTGATAATTTTAACTAGTAGACCAATAATCACATGA 708 0.411 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQELNRKGNLIRQENLELYKKVYGTKDDSETNRNSVLTNGLGIGEDLQVPVNLQLSQPQQQHYKAPSATAKLGYDFLIILTSRPIIT* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00131 235 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu8g00131 235 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Lapu8g00131 235 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lapu8g00131 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu8g00131 235 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Lapu8g00131 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu8g00131 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu8g00131 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu8g00131 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu8g00131 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu8g00131 235 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu8g00131 235 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lapu8g00131 235 Coils Coil 86 113 - -
Lapu8g00131 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu8g00131 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00131 Lapu-Chr8 10253799 10275642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00131 1 214 MADS-box Gene Family AT4G37940 64.953 6.52e-95 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu8g00131 K-box 5.1e-27 No_clan