Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00116 ATGGAGCTTTATGACCATGATTTCTTGGAGGAATCAATGGCTCTAAGAAGAGAACCATGGGATACCAATCCATGTTCACAAGAAAACCAGCTTTTCTCTAATGCCTGGAGTTTTGATGGTTTTGATCAAAACTATCAAACTTTTCCTCCAAATACTTTCTCTTTCCAAGAAGTTCCTCAAGGTTACAATTATGACTACACCTTCAATGAAATCTACAGTTCCTTGCTTGATGAATTCTCTGCACCCCAAATTGTAGATTCATCTTATAACAACGCCCTTGAGACTTCACATAACACCCCTCCATTCGTGGCTCATGACGATTATCCATTGTCCATGATGGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGCCACTTGCAAAATGGAGCCCAGCCATTCCCCTGAAATGCCTGTTTTCAACACAGATTCATGTGTGGAAAGAAAGAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGGAGAAGAAGGAAGAGATTAAACGACAGGCTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACTATCGATTACATGAAAGAGCTCTTGGAAAAGATTGACAATTTGAAGCAAGAAATAGAAGTGGATTCCAACATGGCTAGCATTTTGAAGGATACAAAGCCAAACGAAATCTTAGTAAGAAATTCTCCGAAGTTTGATGTGGAGAGGAGAAATATCAATACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCTTGTTGCTGTCTACCGTAAACACATTGGAAACACTAGGCCTCGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCAAAGTGCAAGCTTCTTGTTCAGAGGAATTGCAGCAGAAGACAATTCTGAGTTCAGAAGATATAAAGCAAGCACTGTTTAGAAGTGCTGGATATGGAGGAAGATGTTTGTGA 1002 0.4112 MELYDHDFLEESMALRREPWDTNPCSQENQLFSNAWSFDGFDQNYQTFPPNTFSFQEVPQGYNYDYTFNEIYSSLLDEFSAPQIVDSSYNNALETSHNTPPFVAHDDYPLSMMEEEDPGLLGEELHCLDLQATCKMEPSHSPEMPVFNTDSCVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKIDNLKQEIEVDSNMASILKDTKPNEILVRNSPKFDVERRNINTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFKVQASCSEELQQKTILSSEDIKQALFRSAGYGGRCL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00116 333 SMART finulus 170 219 IPR011598 GO:0046983
Lapu8g00116 333 Coils Coil 203 230 - -
Lapu8g00116 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Lapu8g00116 333 CDD ACT_UUR-ACR-like 259 322 - -
Lapu8g00116 333 Gene3D - 172 246 IPR036638 GO:0046983
Lapu8g00116 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 29 327 - -
Lapu8g00116 333 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Lapu8g00116 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00116 Lapu-Chr8 9982282 9984045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00116 56 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 48.013 2.49e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g00116 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00116 - - vra:106764382 594.349