Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00104 ATGGAAGCACATCCAAACGCGGCCTCCATGCTAAGAAGCAGAACCATAATTCCTCCTCCTCCACCGTTACTCGCCCTCAGTGCAAGGCTTCCGTCACCGTCACCGTCACTTTTGTCGTCACCGTTACTCTCACCCTCCGTTACCCCCTCAGAACCCACATTATCGAGTTCAAGAACCCAGAAACCCTGGTTCCACCGTTTTTCTCTCTTCTCCAATTCTCATACTCTTAAAACCATGACGCTCTCCACGTGCTTCTCTCACACTAGGCCCACCGTCACCATTCCGGGCCCACCCGAATCGGAACCCCAACCCGATTCCCCTCTCGTGGTGGTTTCCTTCTACAAATTCGCAGATTTCCCTGATCATGCTCTCTTGCGAAACCCCTTAAAGCAACTCTGCCAACGCCTGCGTGTTTCAGGTGGAATTATTCTTGCACCTGAAGGGATCAATGGTAGCATATGTGGGACTCGGGAGTCGGTAGAGGATGTTCTGGCATTTGTGGAAGGCGATGATAGATTGAAGGGGCTAAGGCGAGTGGAATCACCAGTCAGTCCTGAGGAGGAGGCCATCCATCATGGGCATAGTGCTGCTTCTCCTCTTTCTGCTGGGGAAGATGCACCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTAACTCTTGGGATGCCTACTGTGTCGCCTATTGAAAGGGTTGGAAAGTATGTTGGCCCAGAAGAGTGGAATGCTTTGATTAATGATCCAGATACAGTGGTTATTGATGTGCGGAATAACTATGAAACCAGAATAGGAAAGTTTAAGGGAGCTGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTTTTGGGTAGAGGAGCATTTCCAGCTTAGCGAAACAGATAAGCATCCAAAAGTTGAGGTAAACAACTCTGTCCAACATGCTGAAAAGGAAATGGAGAATCAAAAACAACATATGCCACGTGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGGTTTATCACCTAGAAGGTGGAATTCTAAAATATCTTGAAGAGGTTCCAGAGACAGAGAGCCTCTGGGAAGGGGAGTGCTTTGTTTTTGACAAACGAGTCTCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGTTGTAAACAGCCTGTAAGTGATGCTGACATGGAGGTCCCAGAATTTGAATATGGAGTTTCCTGTCCTTACTGTTTTGCACTGAAATCTGATGAAGAGAAGGAGAGAGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGGATCATTGGTGGTCCAGATAAGGGTCGCCGCCCAACTACTCGAGAATCGGAAAGTGCTAGCAGGAATCCAAACCAGCTTTCACGTTCTATTTAA 1428 0.4734 MEAHPNAASMLRSRTIIPPPPPLLALSARLPSPSPSLLSSPLLSPSVTPSEPTLSSSRTQKPWFHRFSLFSNSHTLKTMTLSTCFSHTRPTVTIPGPPESEPQPDSPLVVVSFYKFADFPDHALLRNPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEDVLAFVEGDDRLKGLRRVESPVSPEEEAIHHGHSAASPLSAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYVGPEEWNALINDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPFWVEEHFQLSETDKHPKVEVNNSVQHAEKEMENQKQHMPRVAMYCTGGIRCEKATSLLLSKGFKEVYHLEGGILKYLEEVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEVPEFEYGVSCPYCFALKSDEEKERARARQRQFERWGIIGGPDKGRRPTTRESESASRNPNQLSRSI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00104 475 MobiDBLite consensus disorder prediction 37 58 - -
Lapu8g00104 475 MobiDBLite consensus disorder prediction 436 475 - -
Lapu8g00104 475 Pfam UPF0176 acylphosphatase like domain 109 221 IPR040503 -
Lapu8g00104 475 Gene3D - 99 222 - -
Lapu8g00104 475 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 101 457 IPR020936 -
Lapu8g00104 475 CDD RHOD_YceA 236 362 - -
Lapu8g00104 475 Hamap tRNA uridine(34) hydroxylase [trhO]. 106 406 IPR020936 -
Lapu8g00104 475 Gene3D - 223 402 IPR036873 -
Lapu8g00104 475 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 218 395 IPR036873 -
Lapu8g00104 475 Pfam Rhodanese-like domain 242 362 IPR001763 -
Lapu8g00104 475 SMART rhod_4 239 366 IPR001763 -
Lapu8g00104 475 MobiDBLite consensus disorder prediction 181 201 - -
Lapu8g00104 475 Coils Coil 301 321 - -
Lapu8g00104 475 ProSiteProfiles Rhodanese domain profile. 249 369 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00104 Lapu-Chr8 9674779 9679257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00104 108 475 Sulfurtransferasese or Rhodanese AT2G40760 73.656 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00104 - - gmx:100784854 753.436