Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00102 ATGGGTAGGCGAAAAAGCAAACCACATCGAGCAGGTGGGATAATACTAGAAACAGATGCTTCTGCTGAGACAGAATTGGATAAACAAAATGTTGTAGAAGGAGGGGAAGAAGCAAACGGTAATTCCGGTGGCATTGATAAGCCTTATTTTGTGGAGGTTGCTCGGTTGGATTGGTTGTCGAGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAATTTGAGTGAAGGTTTCTCTGGTTTTGAATTGTCAGAGGATTTTTGTCGGGATCAGCAGTACTTGTTAAGATTTCGAGTGTGCAATGTCAGTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACAGATATTCGTCTAGAGTTTGTAAGAAGAGTTACCGTTGACCAAGTGGAAAAATATACAGTGTTGTTATCTGGTGTTTTTGACGGACCTGATGACGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCTCGGGGTTAGGCTTTCTGAGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGAGCGCCTTTCATGCATGTGAGTCGCTTCTTGATACTTCTAGACAACTATGGAAAAAGAGCATGGTGAATGTAATGTCTTGGTTGCGTCCAGAAATAATGACTTCGGAAGTTAGGTATGGGTTCTTTAGCTGTACGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAAGGCAAGGAAACATGCAAGGTTTGATCCTGCAGGTTTATATGAAGCCATTAAACCTTCAAAAGCTGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAATCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCATTATGCATACCTGTGGATTTTCTGGATACCTGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCATCGTAGATCAGCATCTGGAAGTGACATAGTATTTGATTTAGAGCCACAAATTAATGGGGATCAAAAAGTCACTTTGAAAAGAATTAAAAGAGATCGCGTGGAGTGTATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGAACTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGAAGTGAAAGCAAGACATATAAAACTACCATGGCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGCGCCACTCTTATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCACGATGAAATTATACGCCATACACATCACGGCTCCTTGAAAACTTGTATTTATGAAGGTGTGCGGGAAACATCTTTTTCCAATACATCTGTGATGGATATCAGTGATCTTGCTAATGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATCTGTCCCACGATTCTGATAGGCATGTAGGTGATCGACACTTTCTGAGGTTTCAAAAAAGGTACCCTGTCATCCCTACTCTTCTTACAAGAATATATTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAATACCACAGCTTGCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGCATTACTGGCACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTCTAAGGTTCCTTGTGGCTAGTCCATTTGATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCATATGAGAAGGGAGATGTGAGAGCTATGGAGTTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCTGATGAATTGGACCTTCCTTCCCAAGAGGAGTGCCTCTCTTGGCTTACGCTCTCACCAGTAGAGGAGCATTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAGGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGGCCCAGATTCTATATCTTTGCAAAGTTCATCTGATCCTTTAATCACTCATACCGAGGCAGGCAAGCTACTAAATGCTTTGTTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCTTGCAGCAGACACCAATGACTATGGAGGAAATACTGATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAAGAAGCTCTTAGGAAGTTAGTTATTGCTTTGAATGCACTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATCACTTTACAGTGAAGCTCTTAGTTTGGCTGGAGAGCACTCTGAAGATTTTCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCTCTTGCTCCAAACTTTTCTTTAATATTGGCATCCAAAGGAAAGCACTTCTTTGAAACTTCTGAATTTAAGATGACCAAAAGACATTTAATTGTAAAGGTTGACAATTGTCATGTGAAGAGGCAAAAAATAAGTAGTTGTGATGAAATAAATGTAACAGTGTCGTCTGCAGATTCATCAAATGTCAGCCTTTCAGAAAATGACATAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAGTTTCATCAAATCTCTGATAGCAGAATGTGAGGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCAAAGCTTTTTGCAGCCCAACAGGAGTTTCAAAATTCTTACATTCAGGTCTGTAAGGCTTATTGTGACAGCAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAATAAAGATTTTTCTGCTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAATTTCAAACAATTCAAAATCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATAAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGTCCCCCGTGTGTTTTGTGCGAATTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCACTGAATCATTTTCTCTCGAAGCTATCACAATCTAGTAACAGTTCTACAACATCTGATATTGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCACGATCAGCATCTGAGTTGGAACTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGGTTAGGAAGGGAGAGTGTCTCAGCTGCCACCAAGGATTTACATGTGTTTGAGGGAATGCGAAAGGAGTTTGGCCAAGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGACGAAATAAAGATGGCTGTTTCCCGTCTTCACCTACGGGCAAGCGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTAGTTGCAGCTAGCTCGGACTTTTCCCATGATAAGTTTTTGTCATTGACCATGTTGTCCCAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCAATTTGAAAGTCCAAACAGTTCTTCATTTACACGAGAGACAACTGCAATGTCAAACTCTACTGAAGAGAAGGCTGGATTTGTGTCTAAAACTGATGATGAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCCATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTCCATAATTGGGTGATGTGCCCTACTTGTCGGCAGCATACTGATTTTGGAAACATTGCATATGCTGTTGATTCGGAGAATGAATCTTCCAATCTTTCAGTGCTGCATACTATTGACAGCAGTAGCAGTGAAAAATGTGAAGCATCCATTAGTGTGAAAGGATCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTGAAGGCTAATGATCATAGTGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTACTGCCAATAACATTACCTACATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGACACAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTGCTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGGAACACCAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCTCTTACAATGCCAGAAAATGAAGAAAATCCTAACACAAACCCAAATCTTAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCCGCTGAGAAGAGACTTAATGAACAAAGGACATGA 5016 0.4015 MGRRKSKPHRAGGIILETDASAETELDKQNVVEGGEEANGNSGGIDKPYFVEVARLDWLSSEHLDISEVVLRDLNLSEGFSGFELSEDFCRDQQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIRLEFVRRVTVDQVEKYTVLLSGVFDGPDDGVTGLLHLASLKFVTLRPVLGVRLSEEISSLRVRVEVLKSAFHACESLLDTSRQLWKKSMVNVMSWLRPEIMTSEVRYGFFSCTKMDGDPQTEMVDDTCKARKHARFDPAGLYEAIKPSKAEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEENQGERERNQFHSPLCIPVDFLDTCSQMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFTHRRSASGSDIVFDLEPQINGDQKVTLKRIKRDRVECICGAVSESLKYEGLWVQCDICDAWQHANCVGYSPKGKSLKSKQGSESKTYKTTMAVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHHGSLKTCIYEGVRETSFSNTSVMDISDLANADIVLTTYDVLKEDLSHDSDRHVGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTACTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDKYRWWTDVIRDPYEKGDVRAMEFTHKVFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKGPDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATSLYSEALSLAGEHSEDFRLDPLLNIHIHHNLAEILPLAPNFSLILASKGKHFFETSEFKMTKRHLIVKVDNCHVKRQKISSCDEINVTVSSADSSNVSLSENDIKEDQEFDNLSASFIKSLIAECEDSKQKYLSVFSSKLFAAQQEFQNSYIQVCKAYCDSRTDQNTFWWLEALHHAEQNKDFSAELIRKIEEAISGISNNSKSSRITARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDKTMEKPKEEDIERVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRESVSAATKDLHVFEGMRKEFGQARSLALAQAQYLRAHDEIKMAVSRLHLRASEDDKSLDALGENELVAASSDFSHDKFLSLTMLSQIKGKLRYLKGLVQSKQKLQFESPNSSSFTRETTAMSNSTEEKAGFVSKTDDETCPVCQEKLGNQKMVFPCGHVTCCKCLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDSENESSNLSVLHTIDSSSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHSAKVLVFSSWNDVLDVLEHAFTANNITYIRMKGGRKAHVAISQFRGKQNDTKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPENEENPNTNPNLRHLPPSVAAAIAAEKRLNEQRT* 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00102 1671 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Lapu8g00102 1671 SUPERFAMILY RING/U-box 1351 1408 - -
Lapu8g00102 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1626 IPR027417 -
Lapu8g00102 1671 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Lapu8g00102 1671 CDD DEXQc_SHPRH 289 688 - -
Lapu8g00102 1671 Gene3D - 346 397 IPR038718 -
Lapu8g00102 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 687 IPR027417 -
Lapu8g00102 1671 Pfam Helicase conserved C-terminal domain 1453 1575 IPR001650 -
Lapu8g00102 1671 CDD PHD_TCF19_like 416 457 - -
Lapu8g00102 1671 Coils Coil 1067 1087 - -
Lapu8g00102 1671 SMART helicmild6 1483 1575 IPR001650 -
Lapu8g00102 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1337 1413 IPR013083 -
Lapu8g00102 1671 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Lapu8g00102 1671 Gene3D - 481 709 IPR038718 -
Lapu8g00102 1671 Pfam Zinc finger, C3HC4 type (RING finger) 1356 1403 IPR018957 GO:0046872
Lapu8g00102 1671 CDD SF2_C_SNF 1449 1586 - -
Lapu8g00102 1671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 47 1670 - -
Lapu8g00102 1671 SMART ring_2 1356 1403 IPR001841 -
Lapu8g00102 1671 SMART ultradead3 285 658 IPR014001 -
Lapu8g00102 1671 Gene3D - 1414 1652 IPR027417 -
Lapu8g00102 1671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1455 1626 IPR001650 -
Lapu8g00102 1671 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Lapu8g00102 1671 SMART PHD_3 414 482 IPR001965 -
Lapu8g00102 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 480 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00102 Lapu-Chr8 9654687 9673890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00102 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.104 1.95e-34 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu8g00102 SNF2_N 4.1e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00102 K15710 - gmx:100776659 2948.3